PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001623.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HSF
Protein Properties Length: 401aa    MW: 45566.7 Da    PI: 4.6655
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001623.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.56.9e-36141052102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl k+ye+++d+++++++sws n++sf+v+++ ef++++Lp+yFkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F 
  Itr_sc001623.1_g00007.1  14 FLAKTYEMVDDPSTNSVVSWSLNNKSFIVWNPPEFSRDLLPRYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEGFV 90 
                              9********************999****************************************9998.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +g+ +ll++i+r+k 
  Itr_sc001623.1_g00007.1  91 RGQPHLLKNIHRRKP 105
                              ************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.5E-39498IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-6310103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.16E-3510103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.7E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.7E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDEASCTNNA LPPFLAKTYE MVDDPSTNSV VSWSLNNKSF IVWNPPEFSR DLLPRYFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANEGFV RGQPHLLKNI HRRKPVHSHS TQNLHSSPLN  120
ESERQGYKDD ITRLNGDKES LLLELQRHKQ DHQGLELQMQ RLTERVQHVE QGQRSMLSSL  180
ARTLDKPELE LSLMPQMGLP DRKRRLPGNN YLYTETGTED NQMSTSQILM AENMISTSLV  240
TFNKELLDQL ESSLIFWENI LQDVGQTVVQ ESSAIELDES TSCADSPAIS YTQLNDEVEP  300
KTSGIDMNAE PSANPVLEVA PPEETGVAPN VPTGVNDLFW EQFLTENPGS TDAPDVLSER  360
KNLDGRKSEN KPVDQGKFWW NVKSVNSLAE QLGHLTPAER T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-231110326129Heat shock factor protein 1
5d5v_B2e-231110326129Heat shock factor protein 1
5d5v_D2e-231110326129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200205DRKRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019198635.10.0PREDICTED: heat stress transcription factor A-4c-like
RefseqXP_019198637.10.0PREDICTED: heat stress transcription factor A-4c-like
TrEMBLM1CRG00.0M1CRG0_SOLTU; Uncharacterized protein
STRINGSolyc02g072000.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-113heat shock transcription factor A4A