PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001584.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 263aa    MW: 29683.1 Da    PI: 4.7359
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001584.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.71.9e-0948058128
                      NAM  58 wyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfy.kgrapkge.....ktdWvmheyrl 128
                               y+F++ ++k ++g+r  r + ++g+Wk +   +++ + +++++g +k+L +  k++++kg        +W+m+ey+l
  Itr_sc001584.1_g00001.1   4 RYYFTELRRKCERGSRFWRgVGEHGTWKGQDAGHPIRV-RDKVMGFRKSLKYEmKKSKSKGGlgdrpGESWLMKEYSL 80 
                              6******************9999**************9.8999*********953344444344444689******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.67198IPR003441NAC domain
SuperFamilySSF1019419.42E-13497IPR003441NAC domain
PfamPF023651.7E-4580IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MMTRYYFTEL RRKCERGSRF WRGVGEHGTW KGQDAGHPIR VRDKVMGFRK SLKYEMKKSK  60
SKGGLGDRPG ESWLMKEYSL SNDYLRDKNV VLCRIRRRVV RSTSRSSESS TLNINENDTP  120
LEIYNWPEND DVTVSLPPTQ TPTLAAADVS SGVDDAYGGV IAMENDTLQL DDEWDQLLRT  180
PENESLLPPS ETSTLAAAEF SSGVDDAHGG VSTMGNDPLV DELDELLKKT PPHDILEDWS  240
DILTQEDIER INRPGPVPIL RPN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163553.14e-94PREDICTED: NAC domain-containing protein 78-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-06NAC domain containing protein 2