PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc001565.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 198aa MW: 22383.8 Da PI: 4.8071 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 117.8 | 1.1e-36 | 8 | 127 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ ++ +e ++wyf+s+r +r+t++gyWka Itr_sc001565.1_g00004.1 8 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYDPWDLEGRAMGEGNKWYFYSRRTA--------SRITSNGYWKAL 84 79*************************999.99**************977778899******9854........799********* PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g d++++ + +g+ vg+k+ +fy g+ p+gekt+Wvm+eyrl Itr_sc001565.1_g00004.1 85 GGDEPIFPSsGGHRVGVKRCYAFYIGEPPQGEKTSWVMQEYRL 127 *******8868899***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-49 | 4 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.351 | 8 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-22 | 9 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MGENSVNLPP GFRFYPTDEE LVVHFLHRKA ALLPCHPDVI PDLDLYPYDP WDLEGRAMGE 60 GNKWYFYSRR TASRITSNGY WKALGGDEPI FPSSGGHRVG VKRCYAFYIG EPPQGEKTSW 120 VMQEYRLSAS PDSASASTTS AKSSSRRRTH SKNDYSKWVI CRVYDSNCDD DGDDGNELSC 180 LDEVFLSLDD LDEISLPH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-39 | 4 | 167 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-39 | 4 | 167 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-39 | 4 | 167 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-39 | 4 | 167 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-39 | 4 | 167 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-39 | 4 | 167 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-39 | 4 | 167 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-39 | 4 | 167 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-39 | 4 | 167 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-39 | 4 | 167 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-39 | 4 | 167 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-39 | 4 | 167 | 16 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-39 | 4 | 167 | 13 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-39 | 4 | 167 | 13 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019171608.1 | 1e-107 | PREDICTED: NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 2e-84 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A068TMB6 | 1e-101 | A0A068TMB6_COFCA; Uncharacterized protein | ||||
TrEMBL | A0A1J6IPU6 | 1e-101 | A0A1J6IPU6_NICAT; Nac domain-containing protein 104 | ||||
STRING | XP_009762857.1 | 1e-102 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3766 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64530.1 | 7e-68 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|