PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001564.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | WRKY | ||||||||
Protein Properties | Length: 192aa MW: 21518.6 Da PI: 9.2013 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.2 | 6.2e-32 | 113 | 171 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s++prsYYrCt+++C+vkk+++r ++d+++v++tYeg Hnh+ Itr_sc001564.1_g00002.1 113 LDDGYKWRKYGQKSVKNSTHPRSYYRCTHHTCNVKKQIQRLSKDKSIVVTTYEGIHNHP 171 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-32 | 100 | 171 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-28 | 105 | 172 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.311 | 108 | 173 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.6E-36 | 113 | 172 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-25 | 114 | 171 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MEGEEPTPAP PSLPALLANG DINIQDLFSF PSTSVVEHNN PSIMLSHLPI QSSVVGSDSI 60 DWVGLLSGCM DQMAAPAPAS RGGENCVQKN KGKRKKYVPP RVAFHTRSTE DILDDGYKWR 120 KYGQKSVKNS THPRSYYRCT HHTCNVKKQI QRLSKDKSIV VTTYEGIHNH PCEKLMETLT 180 PLLKQLQFLS RF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-24 | 101 | 170 | 2 | 71 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019160501.1 | 1e-120 | PREDICTED: probable WRKY transcription factor 43 | ||||
Swissprot | Q8VWQ4 | 5e-57 | WRK56_ARATH; Probable WRKY transcription factor 56 | ||||
TrEMBL | A0A1S4C5P0 | 9e-71 | A0A1S4C5P0_TOBAC; probable WRKY transcription factor 45 | ||||
STRING | XP_009598201.1 | 3e-71 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6374 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64000.1 | 4e-59 | WRKY DNA-binding protein 56 |