PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001519.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 303aa MW: 35275.9 Da PI: 5.0266

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001519.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.9	1e-14	11	94	1	89
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ffk + + ++s+ + +p + ++ gk ++t+ l+d+ + Wevk+ +++ ++++GW++F k+n ++ gDf+vF + ++ Itr_sc001519.1_g00004.1 11 FFKFF--NPETSSQKMKMPPEVS-AYmRGK--LPRTVFLRDRYKNMWEVKV--GSSGNDLFFEEGWEKFIKDNCVELGDFLVFDYLDT 91 67777..5555666699998876.553555..7889*************..999999***********************9876 PP .SE CS B3 88 .se 89 s Itr_sc001519.1_g00004.1 92 kSL 94 344 PP
2	B3	42.5	1.2e-13	207	282	10	88
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 ++++ l +p ++++++k + t++l+d++g+ We k++ +k + r+vl++GWke +k n ++e D+++ +++ ++ Itr_sc001519.1_g00004.1 207 KGRKNELHIPEYVIRDFNLK--LPSTMILRDPKGKDWEAKVKPWKDG-RVVLAGGWKELCKWNLIQEEDSCICEFVAEE 282 567788*******99988..7779***********888885.89********************9987654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-16	5	94	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.06E-17	6	100	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	12.083	9	103	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.3E-13	11	93	IPR003340	B3 DNA binding domain
SMART	SM01019	7.2E-6	11	103	IPR003340	B3 DNA binding domain
CDD	cd10017	1.08E-13	20	100	No hit	No description
SuperFamily	SSF101936	7.46E-17	195	281	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.7E-18	197	282	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.491	198	296	IPR003340	B3 DNA binding domain
CDD	cd10017	5.97E-11	199	275	No hit	No description
SMART	SM01019	4.8E-7	201	289	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-11	206	282	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MDGSNKKTKG FFKFFNPETS SQKMKMPPEV SAYMRGKLPR TVFLRDRYKN MWEVKVGSSG 60 NDLFFEEGWE KFIKDNCVEL GDFLVFDYLD TKSLFDFKLL GHPCCDEKIG VGRPNFLVKE 120 EVEWDPSNDS IINENNMSED EYEFSEVEVK EEEEDDDDDG DGECRIEAAL RRNHHKRNAF 180 DYTGASIFKS GLYPQPINPY FVTKTRKGRK NELHIPEYVI RDFNLKLPST MILRDPKGKD 240 WEAKVKPWKD GRVVLAGGWK ELCKWNLIQE EDSCICEFVA EERGMGRKEV LLQIQVVHGP 300 HQA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019154240.1	1e-176	PREDICTED: B3 domain-containing protein REM5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1091	22	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57720.1	5e-14	B3 family protein