PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001499.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | Dof | ||||||||
Protein Properties | Length: 228aa MW: 25347.6 Da PI: 9.2812 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.5 | 8.3e-40 | 27 | 85 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 k++ lkcprC+s+ntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknkk Itr_sc001499.1_g00002.1 27 KDQVLKCPRCNSANTKFCYYNNYSLSQPRYFCKSCRRYWTAGGSLRNIPVGGGSRKNKK 85 7899*****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-25 | 26 | 85 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.0E-34 | 28 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.217 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MRPMEEIVPI IENTSRGERK GIIRFQKDQV LKCPRCNSAN TKFCYYNNYS LSQPRYFCKS 60 CRRYWTAGGS LRNIPVGGGS RKNKKPLKKV ADLVPPVPIS GDHQSSSKIH GGEGHHQDLN 120 LGGQLSAMEL LTGFSTSIGL STAPFIFDPN LLYSQPGISL PQSKQCLKIC LDGIGNHQHH 180 HHLQPMQDTT TTNTRFLLPS DQDLRSTASD QDRDWNNGVL RGGGGESW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019160496.1 | 4e-92 | PREDICTED: dof zinc finger protein DOF4.6-like isoform X1 | ||||
TrEMBL | A0A2C9W9M7 | 2e-47 | A0A2C9W9M7_MANES; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.3 | 6e-37 | Dof family protein |