PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001480.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25257.2 Da    PI: 9.8755
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001480.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.63.3e-181050242
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             +i n+s r+ tf kR++g++KK +ELS+LC++e++ ii+ss
  Itr_sc001480.1_g00006.1 10 FIANDSSRKATFKKRKKGLMKKVSELSTLCGVEACAIIYSS 50
                             899************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.984150IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-25160IPR002100Transcription factor, MADS-box
CDDcd002661.34E-21285No hitNo description
SuperFamilySSF554551.1E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-11323IPR002100Transcription factor, MADS-box
PfamPF003198.4E-191050IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004049.4E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MTRKKIKLAF IANDSSRKAT FKKRKKGLMK KVSELSTLCG VEACAIIYSS YDPKPEVWPS  60
TAGAQQVVAQ FKRMPEMEQS KKMVNQESFI RQRIAKASEQ LKRQVKENRE KEMTEVMFQC  120
LTGKASVQGL NLGDVNDLGW VLEQNLKEIY KGIETLKKTT HQAAAAASSM QKPQWFPEEK  180
MGNNNGDEAA QMGYGNAGEE MMMMMMPFND NQNTMWGAAG SFFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKIKLAFIANDSSRKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464483.16e-93PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-66AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A1S3ZJU31e-91A0A1S3ZJU3_TOBAC; agamous-like MADS-box protein AGL80
STRINGXP_009774462.15e-87(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-69AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]