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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Itr_sc001474.1_g00001.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family | bHLH | ||||||||
| Protein Properties | Length: 309aa MW: 34612.3 Da PI: 9.2645 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 27.7 | 5e-09 | 18 | 63 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
E+ RR++++ + +L +l+P + +K ++L +A++YIk+L+
Itr_sc001474.1_g00001.1 18 TEKHRRQQMKGLYGRLASLVPReK---SLEKSPAFDVLDHATNYIKQLE 63
7*********************55...8899999*************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 11.236 | 10 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 1.19E-11 | 15 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.2E-5 | 16 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 8.3E-11 | 16 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 4.0E-6 | 18 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 6.78E-5 | 19 | 66 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 309 aa Download sequence Send to blast |
MQPNCSSLLP PKPRRHLTEK HRRQQMKGLY GRLASLVPRE KSLEKSPAFD VLDHATNYIK 60 QLESNINELK ARKDSLKLPV VIDVSESERG ESLEINIVCG LEKKKLLKMH EVFRTLQEEG 120 AEVVSATDST VGLKIYHTII CKFPCNTTAE SAMTYDAQCI MDYGPRLTPS LPLLSILLME 180 ERNKMLQRAP FQKSGKKWCF VSPHQKAIFQ PFQKELLYNK LAALESCITV NPPSEGRFLM 240 VQPHLIPASL VTVSDGDEIR AVSVSPAATS RSFILEVCLK PSSIARLNVR GPLNCNSPEK 300 NGSSPEKMK |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA13045 | 3 | 18 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G20970.1 | 8e-15 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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