PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001393.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 202aa MW: 21990.3 Da PI: 6.8611

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001393.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	72	94	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Itr_sc001393.1_g00005.1 72 YPCTFCRREFRSAQALGGHMNVH 94 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.25E-6	69	99	No hit	No description
Pfam	PF13912	1.0E-5	72	96	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.448	72	99	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	74	94	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MAAHLGLASL SHSQLQNFAQ SHHTPAPPPD SASTAMWNPR NTAAEEQEEE DSWEIKAFEE 60 DTSNATWPPR CYPCTFCRRE FRSAQALGGH MNVHRRERAR LQLPTTTTTS AAAAGLCLLY 120 SLPNPNAAAA ANTNSSPRLL SVSPFAANSF PATPCITSPI HPSDSGDKSN NKNYRFGTRR 180 REPAIVEELD LELRLGCSSS SP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	1e-11	67	94	2	29	superman protein
2l1o_A	1e-11	67	94	2	29	Transcriptional regulator SUPERMAN
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019190712.1	7e-98	PREDICTED: uncharacterized protein LOC109185185
Refseq	XP_019190713.1	7e-98	PREDICTED: uncharacterized protein LOC109185185
TrEMBL	A0A1U8F631	1e-50	A0A1U8F631_CAPAN; Uncharacterized protein
TrEMBL	A0A2G3AFF7	1e-50	A0A2G3AFF7_CAPAN; zinc finger protein JAGGED
STRING	XP_002519824.1	3e-46	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5953	21	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	3e-25	C2H2 family protein