PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001367.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | WOX | ||||||||
Protein Properties | Length: 146aa MW: 16798.7 Da PI: 9.7952 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 10 | 70 | 3 | 57 |
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++L +l+++ r+ps +e++ ++++l +++e++V++WFqN+R +ek+ Itr_sc001367.1_g00001.1 10 TRWNPTQEQLQILRDLYYNngMRNPSPQEIRGITQRLsqygNIEEKNVFYWFQNQRGREKQ 70 8****************97679*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 99.3 | 2.8e-32 | 9 | 71 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +tRW+Pt+eQ++iL++ly+ +G+r+P+ +ei+ it++L++yG+ie+kNVfyWFQN++ Re+q+ Itr_sc001367.1_g00001.1 9 STRWNPTQEQLQILRDLYYnNGMRNPSPQEIRGITQRLSQYGNIEEKNVFYWFQNQRGREKQQ 71 79***************9779****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 3.1E-4 | 7 | 75 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.48E-13 | 10 | 74 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.0E-17 | 10 | 70 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.57E-8 | 10 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-10 | 10 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.127 | 15 | 71 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MDAKYTYVST RWNPTQEQLQ ILRDLYYNNG MRNPSPQEIR GITQRLSQYG NIEEKNVFYW 60 FQNQRGREKQ QTKRPAKLAT DAATPQDLQQ QATAGGSGGR DTKHPMLETL PLFPMHSDRA 120 DKSKADMNSS HQPSLELTLR PYSPTP |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7604 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17950.1 | 7e-25 | WOX family protein |