PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc001346.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 75aa MW: 8418.72 Da PI: 6.7793 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 51.7 | 2.8e-16 | 14 | 66 | 1 | 50 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleev.ikevdiykvePwdLpkk 50 lppGfrFhP+deel+++yL+kk++g+ ++l + evd++k+ePwd+p + Itr_sc001346.1_g00002.1 14 LPPGFRFHPRDEELICDYLAKKINGSGdpHHLRPPfLIEVDLNKCEPWDIPGE 66 79**********************99855444333499************954 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-17 | 6 | 67 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 18.57 | 14 | 75 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-8 | 15 | 50 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 75 aa Download sequence Send to blast |
MNSGGSLSMV EAKLPPGFRF HPRDEELICD YLAKKINGSG DPHHLRPPFL IEVDLNKCEP 60 WDIPGEIPRA AKLRP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019196527.1 | 5e-38 | PREDICTED: NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 2e-20 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2Z5HVI8 | 5e-40 | A0A2Z5HVI8_IPOBA; NAC7 protein | ||||
STRING | PGSC0003DMT400056916 | 9e-24 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA22773 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12977.1 | 9e-25 | NAC family protein |