PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001330.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 506aa    MW: 57163.5 Da    PI: 10.6411
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001330.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.9e-08658147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
                             ++rW t+E+++l  av ++G+++W+ +a+++       ++ t++ ck r+ ++
  Itr_sc001330.1_g00014.1  6 KMRWGTWEELILGGAVLRHGTDDWNVVASELRartvypNNFTPEACKARYEDL 58
                             68******************************888888888888888888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002491.4E-6658IPR001005SANT/Myb domain
PROSITE profilePS500906.144659IPR017877Myb-like domain
CDDcd001670.00198855No hitNo description
SuperFamilySSF473707.59E-18257370IPR001487Bromodomain
SMARTSM002974.3E-17264372IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.3E-16266370IPR001487Bromodomain
CDDcd043697.51E-8275367No hitNo description
PfamPF004391.6E-11278356IPR001487Bromodomain
PROSITE profilePS5001410.484283353IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MVVGPKMRWG TWEELILGGA VLRHGTDDWN VVASELRART VYPNNFTPEA CKARYEDLRK  60
QYSGCKLVQS FVCIRSLALF WFEELRKRRI EELKQELERS EGSIGSLKSK IEILKAERER  120
SGQAELPVPL VKSEAIELFQ KEGSKDGLSA GSFTQNIRTD ESHECQIPAL TSATETDSKM  180
EGSESCEREK VPSISKLACN KHGGTVKKRR GNRKRKDRVW DSKEGSIGES ENVCSTSAAS  240
ISPSKEASVG YDQTRRPSSV DNHKGSLCSV KNNGLMDVFN NIAQREPALV FRHRLDSQKR  300
ARYKKIIRRH MDMETIRSKL ATLSIKSSVE LFRDLLLLAN NALVFYSKRT REYKAALALR  360
DLVTKAYRQH QYRGPYTKTA FILLPLPTIC CPPVKPRSAR PRPTKQRIPA MLQNNNNNNK  420
NAVPRSLEGL KRPSDPDSSP PLQSLVTAKK GFKQPGKAGK RASGNQVFRH RASEKEDSLH  480
KTMSKGEMGS KPPVLKERKM TRQRLN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169684.10.0PREDICTED: uncharacterized protein LOC109165403 isoform X1
RefseqXP_019169685.10.0PREDICTED: uncharacterized protein LOC109165403 isoform X1
RefseqXP_019169686.10.0PREDICTED: uncharacterized protein LOC109165403 isoform X1
TrEMBLA0A1S3ZSE70.0A0A1S3ZSE7_TOBAC; uncharacterized protein LOC107789922 isoform X1
TrEMBLA0A1U7WXL30.0A0A1U7WXL3_NICSY; uncharacterized protein LOC104228236 isoform X1
STRINGXP_009778975.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55341924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.12e-26DNA-binding bromodomain-containing protein