PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001294.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 287aa    MW: 32128.2 Da    PI: 6.9396
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001294.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd++lv ++++ G g+W++ ++  g+ R++k+c++rw +yl
  Itr_sc001294.1_g00003.1 14 KGAWTAEEDKILVAYITKNGHGNWRSLPKLAGLLRCGKSCRLRWTNYL 61
                             79******************************99************97 PP
2Myb_DNA-binding50.54.9e-1667112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg ++ eE + ++++++ lG++ W++Ia++++ gRt++++k++w+++l
  Itr_sc001294.1_g00003.1  67 RGQFSSEEVDTIIQLHTVLGNK-WSAIASHLP-GRTDNDIKNFWNSHL 112
                              899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-23564IPR009057Homeodomain-like
PROSITE profilePS5129423.295965IPR017930Myb domain
SuperFamilySSF466893.0E-2911108IPR009057Homeodomain-like
SMARTSM007171.6E-121363IPR001005SANT/Myb domain
PfamPF002497.8E-151461IPR001005SANT/Myb domain
CDDcd001671.92E-101661No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2565114IPR009057Homeodomain-like
PROSITE profilePS5129418.9266116IPR017930Myb domain
SMARTSM007178.5E-1466114IPR001005SANT/Myb domain
PfamPF002495.2E-1467112IPR001005SANT/Myb domain
CDDcd001673.52E-1070112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRTPCCNKE GLRKGAWTAE EDKILVAYIT KNGHGNWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPGIKRGQF SSEEVDTIIQ LHTVLGNKWS AIASHLPGRT DNDIKNFWNS HLRKQGSDPN  120
HQNHQMPHPH GKIDEKVETT PSTNHMVQWE SVSVAPSLLD LQSASKMDHH DPFLRLWNSE  180
VGEAFCSFKK PRGVPCQSPV SSSSKFESSS GITLHSEPAS KLLSSADTVE CVPMNCKVEE  240
EEEDTKSYEM VDPSETTLKL LLDFPPVVND MGFFQGPGDN LSIYLQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0722806e-32AB072280.1 Ipomoea nil transposon Tpn110 DNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194987.11e-167PREDICTED: myb-related protein Myb4-like isoform X1
RefseqXP_019194988.11e-168PREDICTED: myb-related protein Myb4-like isoform X2
RefseqXP_019194989.11e-168PREDICTED: myb-related protein Myb4-like isoform X2
RefseqXP_019194990.11e-168PREDICTED: myb-related protein Myb4-like isoform X2
TrEMBLA0A328DMC31e-101A0A328DMC3_9ASTE; Uncharacterized protein
STRINGXP_010672001.19e-92(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.16e-77myb domain protein 17