PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001274.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 394aa    MW: 41481 Da    PI: 8.9249
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001274.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-053759123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C  Cgk F r  nL+ H r+H
  Itr_sc001274.1_g00011.1 37 FFCDVCGKGFQREQNLQLHRRSH 59
                             67********************9 PP
2zf-C2H214.69.8e-05115137123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C+ Cgk +  +s+ + H + +
  Itr_sc001274.1_g00011.1 115 FSCHRCGKKYAVQSDIRAHAKIC 137
                              89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.4E-63660IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.73E-83759No hitNo description
SMARTSM003550.00193759IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.2373760IPR007087Zinc finger, C2H2
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
SMARTSM003558280110IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.2E-4102136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.73E-8110135No hitNo description
PROSITE profilePS501578.746115143IPR007087Zinc finger, C2H2
SMARTSM00355130115135IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MESSSSAMAS KKRKPTPGED AEVIALSPAS LTAASRFFCD VCGKGFQREQ NLQLHRRSHS  60
LPWGLKQRAG GNAAARRRVY VCPVASCPHH DPSKALGDLS GIKKHFCRKH GEKKFSCHRC  120
GKKYAVQSDI RAHAKICGTK TYHCDCGAMF NKWNDFARHT ELCGLILPQP IVETTPVSGL  180
QPPPPSLTLS MAAAAAPSEF PASQGGNEET LDASAGADII KLKVVGDSPA STSSAPARQS  240
LMTSKSMESD FFGALMEPTN LPLSFLCSPH HHLAAATNNA SSSHQYLASP ALSATALLQK  300
AAQVGSIYSG GSTSFLHGLG LSMMSGFNNT QKWNGYAMPE NTTMGSSGGL PDSVVGRESP  360
AVIFSTQQLQ TLDFLGVGGG NGNGGGVFGR LGFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-15111169361Zinc finger protein JACKDAW
5b3h_F1e-15111169361Zinc finger protein JACKDAW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019155942.10.0PREDICTED: protein indeterminate-domain 2-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-66C2H2-like zinc finger protein