PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001239.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GeBP
Protein Properties Length: 422aa    MW: 46175.6 Da    PI: 7.841
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001239.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573114.18.7e-36186282297
                   DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdq 86 
                              lfqrlwseeDei++L+G+i ++++++++p++d++af++f+++s++++v+++ql +KirrLKkK++++ ++ +k+gke +fsk h+q
  Itr_sc001239.1_g00013.1 186 LFQRLWSEEDEIAVLKGMIAYAEEKNADPVADLNAFHDFIRESLHIDVTRTQLQDKIRRLKKKYENNARTsQKKGKERTFSKIHEQ 271
                              79***************************************************************99988789************* PP

                   DUF573  87 kifelskkiWg 97 
                              + ++lskkiWg
  Itr_sc001239.1_g00013.1 272 NGYDLSKKIWG 282
                              **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.6E-32187282IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAKNRPEPAK SVDSEEEESE QEEEEASSDE NGGSDSEPET PLTQVSTKKP PASAPKKPQP  60
SSQPKRVSSS EESGSESDDD SDSNPNVKPI ASKPMDAPSA AATPTKKPRS KPAAPRPTSP  120
TKSAAGTKRP APDGEAKESK KSKKKPNPEV ESSVKKSVTE DSKKKPSVEV ESSAKKSLSE  180
DSKKQLFQRL WSEEDEIAVL KGMIAYAEEK NADPVADLNA FHDFIRESLH IDVTRTQLQD  240
KIRRLKKKYE NNARTSQKKG KERTFSKIHE QNGYDLSKKI WGGHKAQNGS VVKAAESLKA  300
SNASARKDRI KNAVIPVKDS TLAAAEVVDH VLDEEKEANT NMDVDINVEG SKSLNLSGGS  360
LFGKSVNELA EWIEKNKVGL SEEKLIEMEG KWKALKVAEL ELFLKKTALI QEQGRLVLDA  420
LK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175000.10.0PREDICTED: probable transcription factor At1g11510
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.15e-26DNA-binding storekeeper protein-related transcriptional regulator