PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001159.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 335aa MW: 37311.7 Da PI: 8.5399 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.8 | 4.3e-53 | 14 | 146 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratks 80 lppGfrFhPtdeel+++yL +kv ++++++ +i+evd++kvePwdLp k++ +ekewyfF+ rdkky+tg r+nrat + Itr_sc001159.1_g00006.1 14 LPPGFRFHPTDEELITHYLSNKVLDSTFSA-IAIAEVDMNKVEPWDLPFvvtgagKARIGEKEWYFFCVRDKKYPTGLRTNRATVA 98 79*************************999.88***************54777776666999************************ PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 gyWkatgkdke+++ ++ lvg+kktLvfy grapkg+kt+Wv heyrle Itr_sc001159.1_g00006.1 99 GYWKATGKDKEIFR-GKCLVGMKKTLVFYMGRAPKGVKTNWVSHEYRLE 146 **************.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-59 | 10 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.308 | 14 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-27 | 15 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MEKLCEGVGD QMELPPGFRF HPTDEELITH YLSNKVLDST FSAIAIAEVD MNKVEPWDLP 60 FVVTGAGKAR IGEKEWYFFC VRDKKYPTGL RTNRATVAGY WKATGKDKEI FRGKCLVGMK 120 KTLVFYMGRA PKGVKTNWVS HEYRLEGQLS LQNLNKPSKV QNDWVLCRVF QKSSGGKKVH 180 ISGMIRSNYP AGNGPQDSPL LPPLSDSPPC HGGAGKANSY VHCFSSKQQD MNMNMNMNLI 240 NFSPLPISPI IPNNPFTTNP LQIPLLPMQD PATLRNWLAN YGFKTEKEIA SGVSQETGLS 300 TDINTEISSA GKRCFQDPPS TPPPGPQDFD CLWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-54 | 11 | 178 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-54 | 11 | 178 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-54 | 11 | 178 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-54 | 11 | 178 | 14 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-54 | 11 | 178 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-54 | 11 | 178 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-54 | 11 | 178 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-54 | 11 | 178 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-54 | 11 | 178 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-54 | 11 | 178 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-54 | 11 | 178 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-54 | 11 | 178 | 17 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-54 | 11 | 178 | 14 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-54 | 11 | 178 | 14 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019199872.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-111 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1U7VSJ3 | 1e-128 | A0A1U7VSJ3_NICSY; NAC domain-containing protein 100-like | ||||
STRING | XP_009767926.1 | 1e-129 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA152 | 24 | 279 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-100 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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