PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001149.1_g00027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 28188.7 Da PI: 7.3604 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl Itr_sc001149.1_g00027.1 14 KGAWTKEEDERLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56.6 | 5.8e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++ Itr_sc001149.1_g00027.1 67 RGNFTHDEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.216 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.16E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.78E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.266 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.10E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDERLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF THDEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSRG 120 IDPTTHRPIN GGAEPPKETT ISFGAVKPED AENNNSITGK DSEPKKEENQ EETLLFKSEE 180 PQVAEACPDL NLELRISPPS SQETRPPPLP LEAAKSGGGG RVNGLCFACI LGIPNSIDCT 240 CNNNEDYSSG SSSSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019165639.1 | 1e-156 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | P81393 | 1e-112 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A328DVJ8 | 1e-111 | A0A328DVJ8_9ASTE; Uncharacterized protein | ||||
TrEMBL | A0A484L7M1 | 1e-111 | A0A484L7M1_9ASTE; Uncharacterized protein | ||||
STRING | XP_009764613.1 | 1e-110 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-102 | myb domain protein 4 |
Publications ? help Back to Top | |||
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