PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001121.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | TCP | ||||||||
Protein Properties | Length: 131aa MW: 14703 Da PI: 9.7693 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 71 | 3.8e-22 | 10 | 69 | 3 | 62 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikel 62 g+ ++s++h kv gRdRR+Rls++ca r+F L + LG+ ++++t+eWLl qa p i Itr_sc001121.1_g00005.1 10 GRVEKSSDRHKKVFGRDRRIRLSLTCADRVFYLMKTLGHRTAGQTVEWLLSQAMPPINTV 69 566799*************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.8E-21 | 15 | 73 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 18.81 | 15 | 69 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MVASNRSSSG RVEKSSDRHK KVFGRDRRIR LSLTCADRVF YLMKTLGHRT AGQTVEWLLS 60 QAMPPINTVI SGNVAQPLPV RVITPKEEPT MNPIQGLVKS ESDFLCGTEL EYSPMELAWI 120 MFQSPVVNQL V |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15672 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 1e-17 | TCP family protein |