PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001072.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26252.1 Da PI: 9.3089 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72 | 5.1e-23 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie k qvtfskRr g++KKA+EL++LC++eva+i+fs+ gk++ + Itr_sc001072.1_g00007.1 16 KIEIKNHLQVTFSKRRSGLFKKASELCILCGVEVAIIVFSPAGKVFSF 63 67888889*************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 5.23E-28 | 7 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.848 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.7E-34 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-19 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.6E-25 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-19 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-19 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MAKRPSMGRQ KIKIEKIEIK NHLQVTFSKR RSGLFKKASE LCILCGVEVA IIVFSPAGKV 60 FSFGHPNVDP IIDRFLVPRS HHHAAVSGGA AANATVHLVE AHRSAAVREM NLQLTQMTAE 120 TEIERKRGEA LDEMRKERRR RCWWEAPVSE LRLPELEQLR DAMDELKKNV VAQAESIMAE 180 AVNTSTFLAM NGTAAPAAGI FDPSEAKPPR IMGSNTHNHH HHHALHDFGY DLAFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 140 | RKRGEALDEMRKERRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019170880.1 | 1e-134 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1U7UZ26 | 4e-95 | A0A1U7UZ26_NICSY; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_009761267.1 | 6e-96 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-47 | AGAMOUS-like 61 |