PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001062.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 655aa    MW: 74401.7 Da    PI: 4.9299
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001062.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00095627644320
                              ETTTTEEESSHHHHHHHH CS
                  zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                              C++Cg+ F ++  L++H+
  Itr_sc001062.1_g00008.1 627 CEKCGEEFESRNKLHKHL 644
                              *****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465659.16E-23596IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1108.5E-23582IPR001623DnaJ domain
SMARTSM002715.1E-22769IPR001623DnaJ domain
PROSITE profilePS5007618.958877IPR001623DnaJ domain
CDDcd062578.45E-17866IPR001623DnaJ domain
PfamPF002261.7E-20974IPR001623DnaJ domain
PRINTSPR006258.1E-151028IPR001623DnaJ domain
PRINTSPR006258.1E-152843IPR001623DnaJ domain
PRINTSPR006258.1E-154969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576675.27E-14301355No hitNo description
SMARTSM004511.5E-4310344IPR003604Zinc finger, U1-type
PfamPF121713.6E-10313338IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.93313337IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280315337IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764625654IPR007087Zinc finger, C2H2
SMARTSM003555.6625649IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280627649IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MASPDKRCLY EVLGVSRDCS PDEIRSAYKK LALQRHPDKL VQSGVPESEA TAAFQELVNA  60
YEVLSDPRER SWYDSNRSKI LFSSSTSGPN SSSKFGSVPN LFSFFSNSVY SGFSDTGKGF  120
YKVYADVFDK VYHNEVNFAK TLGVNPPKEA PLMGNSNSPY AQACSTLPLC IVFIYGVTAF  180
YNYWLGFTTV MDFCWVDQYD AMAGINRKSR RVMEDENKKL RKKARREYNE TVRGLAEFVK  240
KRDKRVIDMQ VKRSEEMERK REEEQARKKE LERLKKERAK KYEEPDWTQV EDVEDEAVET  300
WEEDDGKEEG NELYCIACGK KFKSEKQWKN HEQSKKHKEK VAALREAFSG EDKEFEEIDV  360
NGRKEEEEEP KTTPEADESG YFSATDDAID ELGEQFEGSF GILGKSGDDD DDEEFETAGK  420
AGYTSDGQDS KGAAGESGSD DDEASILEAM VSGHRSRKNA VSNRHSEIEN DDNEMDFMEY  480
NNLKSSGRKR GSRKQRDRRA EEEMKLNEDE PSGQTDKNTG YDENLDVQRS PKAKTDGDRI  540
AEEEMKLNED ELGQAEKNTG YVENLDVHRS PKAKTDGKED DSSEMIDKIP RQVNKRGNTK  600
KDSNTKSKNA SKGRKEKTTS KVSGNACEKC GEEFESRNKL HKHLGETGHA ALKTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217225KKLRKKARR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019200009.10.0PREDICTED: DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-164JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A328D0610.0A0A328D061_9ASTE; Uncharacterized protein
STRINGXP_009595027.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61101516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-138DNAJ heat shock N-terminal domain-containing protein