PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001045.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 260aa    MW: 28925 Da    PI: 8.616
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001045.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.4e-194186147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +g+W++eEd++l ++v+++G+++W++I++++  gR++k+c++rw + 
  Itr_sc001045.1_g00013.1 41 KGPWSAEEDKILTRLVERYGPRNWSLISKYIK-GRSGKSCRLRWCNQ 86
                             79*****************************9.***********985 PP
2Myb_DNA-binding55.21.7e-1795137347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  Itr_sc001045.1_g00013.1  95 SFSPAEDETILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 137
                              69******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.8643691IPR017930Myb domain
SuperFamilySSF466892.91E-3139134IPR009057Homeodomain-like
SMARTSM007176.4E-174089IPR001005SANT/Myb domain
PfamPF002491.5E-184186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-244294IPR009057Homeodomain-like
CDDcd001671.56E-154385No hitNo description
SMARTSM007171.6E-1592140IPR001005SANT/Myb domain
PROSITE profilePS5129420.75693142IPR017930Myb domain
PfamPF002491.1E-1495137IPR001005SANT/Myb domain
CDDcd001673.86E-1295138No hitNo description
Gene3DG3DSA:1.10.10.607.4E-2395141IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEAFNRSSST SSTSSDSSSS ESSFSAGGKA ARDGKRAERI KGPWSAEEDK ILTRLVERYG  60
PRNWSLISKY IKGRSGKSCR LRWCNQLSPS VEHRSFSPAE DETILAAHAK YGNRWATIAR  120
LLPGRTDNAV KNHWNSTLKR RYQQQNQNQN QSQTFDFAEV TDAKSSPSGS VFFGLENSTL  180
CMNINAGESP RVNTLSHCDE EYDPMTTLSL APPGMGGHEL PERRTESLPA GFWDVMREVI  240
AKEVREYVTS SFSGPSTGFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-42381411104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174094.11e-162PREDICTED: transcription factor MYB44-like
TrEMBLA0A328DT071e-116A0A328DT07_9ASTE; Uncharacterized protein
TrEMBLA0A484KMK21e-116A0A484KMK2_9ASTE; Uncharacterized protein
STRINGXP_009620130.11e-111(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.16e-58myb domain protein 73