PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001013.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 681aa MW: 79432.4 Da PI: 6.9045

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001013.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.7	1.6e-22	58	149	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklel 83 ++Y+++A++ GFsvrk++s+ s + g i+kr+fvC+++g++ +kk++ +++r r++ r+gC+ak+ ++ke ++w+v ++++ Itr_sc001013.1_g00002.1 58 EYYRNFARRNGFSVRKERSRLSPQLG-IYKRDFVCYRSGFAPMRKKSAGEHHRDRKSVRCGCDAKMYLSKEVmdgVSQWCVVQFSN 142 69******************8888.***************************************98867789**** PP FAR1 84 eHnHela 90 HnHel Itr_sc001013.1_g00002.1 143 VHNHELL 149 ***96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-20	58	149	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-20	281	372	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.891	552	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.0E-8	558	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.0E-5	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MRRQQCPCGD WKCFLSYEGE TEEATIASQL ARSESRSTEP MVSPYVGMVF KSDEDAFEYY 60 RNFARRNGFS VRKERSRLSP QLGIYKRDFV CYRSGFAPMR KKSAGEHHRD RKSVRCGCDA 120 KMYLSKEVMD GVSQWCVVQF SNVHNHELLE DEQVRLLPAY RKIQETDQER ILLLSKAGFP 180 IHRIVKVLEL EKEIRGEQLP FLERDVRNFV QNHKKVVQEN DALLTEKRES DTLDLLEACK 240 SAKETDTYFV YDVTVDESNK VENIAWSYGD SVHAYNTFGD VVYFDTTYRS ITYGMLFGVW 300 LGIDNYGKVI FFGCALLQDE VPHSFIWALQ AFLRFMKGRP PRTIITDIDP GIRDAIQSEL 360 PSTKHIISIW NILPKISNWF SLPLGSRYAE FKSEFEVLYH LESVEDFECH WNEMTSRFGL 420 NSDKHIALLF LFRVCWAFAY TRGCFVAQMN SMSYAKYINA FLKEVFGKHT CLRSFFDQVA 480 ISSNYKTRSH DDWPYMHLRT CSPMEEHAKN VLTDFSFSRL QSELILAMQY TASEMANGSY 540 ILRHFKKDDE RLVIWAPKDE QIHCSCKEFE TSGILCRHAL RVLLMKNYFQ LPEKYFLNRW 600 RQESSLLPCD NIRNGYSSGD WFQEYNALTA TLFSESSITV ERSNYVRQEL TKQLTRLIDE 660 VKSMPPPNGV VMDSSLSPVN I

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MRRQQCPCGD WKCFLSYEGE TEEATIASQL ARSESRSTEP MVSPYVGMVF KSDEDAFEYY  60
RNFARRNGFS VRKERSRLSP QLGIYKRDFV CYRSGFAPMR KKSAGEHHRD RKSVRCGCDA  120
KMYLSKEVMD GVSQWCVVQF SNVHNHELLE DEQVRLLPAY RKIQETDQER ILLLSKAGFP  180
IHRIVKVLEL EKEIRGEQLP FLERDVRNFV QNHKKVVQEN DALLTEKRES DTLDLLEACK  240
SAKETDTYFV YDVTVDESNK VENIAWSYGD SVHAYNTFGD VVYFDTTYRS ITYGMLFGVW  300
LGIDNYGKVI FFGCALLQDE VPHSFIWALQ AFLRFMKGRP PRTIITDIDP GIRDAIQSEL  360
PSTKHIISIW NILPKISNWF SLPLGSRYAE FKSEFEVLYH LESVEDFECH WNEMTSRFGL  420
NSDKHIALLF LFRVCWAFAY TRGCFVAQMN SMSYAKYINA FLKEVFGKHT CLRSFFDQVA  480
ISSNYKTRSH DDWPYMHLRT CSPMEEHAKN VLTDFSFSRL QSELILAMQY TASEMANGSY  540
ILRHFKKDDE RLVIWAPKDE QIHCSCKEFE TSGILCRHAL RVLLMKNYFQ LPEKYFLNRW  600
RQESSLLPCD NIRNGYSSGD WFQEYNALTA TLFSESSITV ERSNYVRQEL TKQLTRLIDE  660
VKSMPPPNGV VMDSSLSPVN I

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019191008.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019191009.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A2R6Q9S9	0.0	A0A2R6Q9S9_ACTCH; Protein FAR1-RELATED SEQUENCE 10
STRING	VIT_00s0194g00200.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7532	19	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]