PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001010.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 491aa    MW: 54003.8 Da    PI: 6.2438
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001010.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.2e-10201243446
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                               k+ rr+++NReAAr+sR+RKka++++Le+    L++  ++Lk
  Itr_sc001010.1_g00008.1 201 QKALRRLAQNREAARKSRLRKKAYVQQLETSRLRLTQLEQELK 243
                              6899*************************98777777776666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-7198262IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-7200245No hitNo description
PROSITE profilePS502179.289200244IPR004827Basic-leucine zipper domain
PfamPF001705.3E-7201244IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.53E-6202245No hitNo description
CDDcd147082.92E-21202253No hitNo description
PROSITE patternPS000360205220IPR004827Basic-leucine zipper domain
PfamPF141442.0E-28289362IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MQSFKASVIP PVSLPNSSDM YCNSAFYLRF LSYCIPFSAS PRGDEGGRNG GRFLDIGELD  60
NSAPFHQEDA VDLSRSSIYN DMRLSNASIV SPNSLHFADI NTSIGSTEMG SSETGVDAGR  120
FMMQRGNATA LMGGRVLGGG GGLGNGSFEN WGESGTAEHS QQTDTSTDVD TEEKIQSLGV  180
QHGSVLVVDS MEQSKGRPGE QKALRRLAQN REAARKSRLR KKAYVQQLET SRLRLTQLEQ  240
ELKQARQQGV FVANGFVGDK SHSTTNIGNG ALAFDMEYAR WLDEHQRLIN DLRSAVNCLV  300
GDNELRLLVD GVMSHYDEIF RLTSIGAKSD VFHMLSGMWL TPAERCFMWL GGFRSSELLK  360
ILGNHLEPLT EQQLVGICNL QQSSQQAEDA LSQGMEALQQ LLVETLSSTS LGPNGSGNVT  420
DYMGQMAIAM GKLATIENFL HQADLLRQQT LHQLHRILTT RQAARALLAI NDYMSRLRAL  480
SSLWLARPRD C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140GGRVLGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019164547.10.0PREDICTED: transcription factor TGA2.2-like
SwissprotQ415581e-166HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A2G2YC860.0A0A2G2YC86_CAPAN; Transcription factor PERIANTHIA
STRINGXP_009799342.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-135bZIP family protein