PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001001.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 163aa MW: 17828.1 Da PI: 10.1552

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001001.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84.2	2.7e-26	6	81	55	128
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + e yfF++r+ k+ +r +rat sgyWkatgkdk++ ++ + +vg+kktLvfykg+ ++g+ktdW+mhey+l Itr_sc001001.1_g00001.1 6 DGERYFFIRREVKNGGRNRCSRATLSGYWKATGKDKKIGVSgeAQGVVGIKKTLVFYKGKPSNGSKTDWMMHEYSL 81 5589********************************998545556*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	33.478	1	99	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-31	5	99	IPR003441	NAC domain
Pfam	PF02365	7.1E-14	9	81	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MFGDSDGERY FFIRREVKNG GRNRCSRATL SGYWKATGKD KKIGVSGEAQ GVVGIKKTLV 60 FYKGKPSNGS KTDWMMHEYS LGGAPQPQAN WVLCRIFLKK KGGERSPSAS LVPAFRDFFA 120 AERADLNLAP ASSLSSRSSS VTESCNYQTG DHQEATSCSR AVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-20	1	105	67	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-20	1	105	67	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-20	1	105	67	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-20	1	105	67	171	NO APICAL MERISTEM PROTEIN
4dul_A	3e-20	1	105	67	171	NAC domain-containing protein 19
4dul_B	3e-20	1	105	67	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019184661.1	3e-71	PREDICTED: NAC domain-containing protein 83-like
Swissprot	Q9FY93	3e-35	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2G9H1C1	1e-48	A0A2G9H1C1_9LAMI; Uncharacterized protein
TrEMBL	A0A482ETG6	3e-48	A0A482ETG6_IPOBA; NAC14
STRING	XP_004140548.1	2e-43	(Cucumis sativus)
STRING	XP_004173907.1	2e-43	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	5e-36	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]