PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000999.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 278aa MW: 31650.4 Da PI: 5.654

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000999.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.5	8.4e-26	111	159	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + e++skyF++pi++AA+eL+v+lT+LK++CR++GI+RWPhRk+ sl Itr_sc000999.1_g00009.1 111 MLCRETISKYFYMPITKAARELNVGLTLLKKRCRELGIRRWPHRKLMSL 159 567899****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.245	96	179	IPR003035	RWP-RK domain
Pfam	PF02042	4.2E-21	112	159	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MVPGENNLQL SFPVQSWSDN NLAWDYDHDD YDYDFPVQTT YHYTSFDYHS FPLMDNYMFL 60 INDPLYSHPT QSIIQGGGSV VYGDEGVEEQ QKMGDDGGNN KKKGRNDCSK MLCRETISKY 120 FYMPITKAAR ELNVGLTLLK KRCRELGIRR WPHRKLMSLQ TLISNVQVLG KNEEEEKLRE 180 AVQLLEKQKR EIEESPDMEM EDTTKKLRQA CFKANYKKRK LTVSVSGAGM SSSSPSSAPA 240 ISAGATAATV DYEEDHQMDS LLSYYFSSSS SSSTAIHY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019199919.1	1e-114	PREDICTED: protein RKD1-like
TrEMBL	A0A0R0JQB7	2e-65	A0A0R0JQB7_SOYBN; Uncharacterized protein
TrEMBL	A0A445KIH0	2e-65	A0A445KIH0_GLYSO; Protein RKD1
STRING	GLYMA05G01030.2	1e-61	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-50	RWP-RK domain-containing protein