PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000972.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 305aa    MW: 34669.2 Da    PI: 9.5199
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000972.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00011139161223
                              EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                              +C+ C+++++++ +L  Hi+  H
  Itr_sc000972.1_g00007.1 139 SCSVCSRVYPTSRLLSIHISEaH 161
                              6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003556.9111136IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113136IPR007087Zinc finger, C2H2
SMARTSM003555138161IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280140161IPR007087Zinc finger, C2H2
SMARTSM003553.3176201IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280178201IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAMELERAVR LEFPFWSPAR RRYGPDDPFF AAGNIERQLL AKQVALDLTE AEKQVVRNMD  60
YGESRSKDFN QQAPSLSKLA YTDHRKLKDS VVTSQEYNTE SSCNLPLISD VFCPIIGCGA  120
WLRCLDDFED HYNARHSASC SVCSRVYPTS RLLSIHISEA HDSFFKAKVA RGFAMYECLV  180
EGCGAKLSSY KIRQQHLVDK HKFPASYEFF RKAHPSKKRR QKNQQRQASF KTEQDSNAMQ  240
VEDEAMDKLV SAVSKLSTSD SPSTISFGRN RNRGLAFMPR AVQCERTPRP NSSQSSVGSA  300
LNRRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216221KKRRQK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185404.11e-176PREDICTED: zinc finger protein 511
TrEMBLA0A2G3ACY01e-126A0A2G3ACY0_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000520621e-127(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102112022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.15e-93zinc ion binding;nucleic acid binding;zinc ion binding