PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000967.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WOX
Protein Properties Length: 201aa    MW: 22970.1 Da    PI: 9.7166
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000967.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.9e-19465157
                             TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             r +R+++t+eql +L+el++k  r+p+ ++ + ++++l    +++ ++V++WFqN++a++++
  Itr_sc000967.1_g00006.1  4 RPRRWSPTPEQLMVLQELYRKgLRNPNSAQVRTITAHLslygKIEGKNVFYWFQNHKARDRQ 65
                             568*****************99*************************************996 PP
2Wus_type_Homeobox109.81.6e-35666464
        Wus_type_Homeobox  4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                              RW+PtpeQ+++L+ely++Glr+Pn+++++ ita+L+ yGkie+kNVfyWFQN+kaR+rqk
  Itr_sc000967.1_g00006.1  6 RRWSPTPEQLMVLQELYRKGLRNPNSAQVRTITAHLSLYGKIEGKNVFYWFQNHKARDRQK 66
                             6***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.365166IPR001356Homeobox domain
SMARTSM003891.2E-6370IPR001356Homeobox domain
CDDcd000869.44E-5466No hitNo description
SuperFamilySSF466892.05E-10466IPR009057Homeodomain-like
PfamPF000461.4E-16465IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.3E-7665IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MISRPRRWSP TPEQLMVLQE LYRKGLRNPN SAQVRTITAH LSLYGKIEGK NVFYWFQNHK  60
ARDRQKLRKA LLKQMHHRHL PFPGRQDPQP PPSAAAAAVT PNHHPQSLPD SAPSHRHSLF  120
SNPNTFLHQG GDEEGSDMEN CMMMRMYGRD WMLMTTATGG MPQLPTTFPC YVDTTPKTLE  180
LFPLKSTNMK DDQSSSNDDS C
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179494.11e-116PREDICTED: WUSCHEL-related homeobox 3-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.14e-35WOX family protein