PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000953.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 693aa MW: 79963.1 Da PI: 6.5081

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000953.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.3	1.3e-23	72	161	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleH 85 Y+++A++ GFs+rk++s++s++ g +++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke ++w+v+++++ H Itr_sc000953.1_g00002.1 72 YSSFARKNGFSIRKARSTESQNLG-VYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKELvdgVAQWYVSQFSNVH 156 9*****************8888.**************************************998766789****** PP FAR1 86 nHela 90 nHel Itr_sc000953.1_g00002.1 157 NHELL 161 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-21	72	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-24	293	384	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.287	565	600	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-7	567	598	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.9E-4	575	602	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MAAKTLNNIW IQRQQCPCGD WKCYVKCDGD DQVTSGAQMA KSGLTSFVSQ ENICTPYVGQ 60 IFKSDDEAYE SYSSFARKNG FSIRKARSTE SQNLGVYRRD FVCYRSGFNQ PRKKANVEHP 120 RDRKSVRCGC DAKLYLTKEL VDGVAQWYVS QFSNVHNHEL LEDDQVRLLP AYRKIQEPDQ 180 ERILLLSKAG FPVNRIVKVL ELEKGVRPGQ LPFIEKDVRN FVRTCKKTVQ ENDALITEKR 240 ENDLFDLLES CKAAKERDEQ FAYKYTTDGN GKVENIAWVY GDAVRAAAIF GDVVTFDTTY 300 RSITYNMLLG VWFAIDNHGK AIFLGCVLLQ DETSQSFSWA LQSFIHCMEG RQPETIVTDL 360 DSELRDAIAN EMPNTKHVIC LWKILPKLSS WFSTPLGVQY AEFKSEFDII SQLENVDEFE 420 HQWNHLVARY GLGSDKHIAL LFAYRMSWPI SYIRNFFLAH SLTPEYSKLV ETFLKHILSE 480 QSNLQLFFEQ VSVSISFMNH SKEKLIYTPI KTYMPLEEHA RSILTPYAFS AMQHEIVLSM 540 QYSVTEMPNG SYLVRHYKKM EGECFVIWIP ENEQVHCSCK EFEHSGILCR HCLRVLLIKN 600 YFQIPGKYFP RRWLMESSLI PFGDSIIQTN TDEYSQAFHA LTASIFSESL ISKERASYVD 660 RELRQLLEHV QSMPVVEEVT LSSVPNNVSE TQG

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MAAKTLNNIW IQRQQCPCGD WKCYVKCDGD DQVTSGAQMA KSGLTSFVSQ ENICTPYVGQ  60
IFKSDDEAYE SYSSFARKNG FSIRKARSTE SQNLGVYRRD FVCYRSGFNQ PRKKANVEHP  120
RDRKSVRCGC DAKLYLTKEL VDGVAQWYVS QFSNVHNHEL LEDDQVRLLP AYRKIQEPDQ  180
ERILLLSKAG FPVNRIVKVL ELEKGVRPGQ LPFIEKDVRN FVRTCKKTVQ ENDALITEKR  240
ENDLFDLLES CKAAKERDEQ FAYKYTTDGN GKVENIAWVY GDAVRAAAIF GDVVTFDTTY  300
RSITYNMLLG VWFAIDNHGK AIFLGCVLLQ DETSQSFSWA LQSFIHCMEG RQPETIVTDL  360
DSELRDAIAN EMPNTKHVIC LWKILPKLSS WFSTPLGVQY AEFKSEFDII SQLENVDEFE  420
HQWNHLVARY GLGSDKHIAL LFAYRMSWPI SYIRNFFLAH SLTPEYSKLV ETFLKHILSE  480
QSNLQLFFEQ VSVSISFMNH SKEKLIYTPI KTYMPLEEHA RSILTPYAFS AMQHEIVLSM  540
QYSVTEMPNG SYLVRHYKKM EGECFVIWIP ENEQVHCSCK EFEHSGILCR HCLRVLLIKN  600
YFQIPGKYFP RRWLMESSLI PFGDSIIQTN TDEYSQAFHA LTASIFSESL ISKERASYVD  660
RELRQLLEHV QSMPVVEEVT LSSVPNNVSE TQG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019192874.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019192875.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_019192876.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A1S3ZQL6	0.0	A0A1S3ZQL6_TOBAC; Uncharacterized protein
TrEMBL	A0A1S4DFC2	0.0	A0A1S4DFC2_TOBAC; Uncharacterized protein
STRING	XP_009776059.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7532	19	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]