PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000909.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 163aa    MW: 17851.3 Da    PI: 10.8416
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000909.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-20858256
                      AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  Itr_sc000909.1_g00009.1  8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAAMAYDGAARSLRGA 58
                             69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-32865IPR001471AP2/ERF domain
PROSITE profilePS5103222.787865IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-22865IPR016177DNA-binding domain
SMARTSM003801.4E-35871IPR001471AP2/ERF domain
PfamPF008473.1E-13857IPR001471AP2/ERF domain
CDDcd000187.79E-30865No hitNo description
PRINTSPR003673.9E-11920IPR001471AP2/ERF domain
PRINTSPR003673.9E-113147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MASTREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PEEAAMAYDG AARSLRGAKA  60
KTNFPPPPSV AARPGLTLDL NLPTDNPNNH HHRRSWPSPS GRIMIGEFLQ TGVLKEVVPP  120
NVVNAAPPSA SPPSESGGGA ANFFSIVRRG LPIDLNEPPP LWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21865563ATERF1
3gcc_A3e-21865563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162102.13e-86PREDICTED: ethylene-responsive transcription factor 12
SwissprotQ94ID65e-46ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A068TU635e-71A0A068TU63_COFCA; Uncharacterized protein
STRINGMigut.M01117.1.p3e-69(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.13e-43ERF domain protein 12