PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000909.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 255aa    MW: 27097.5 Da    PI: 9.7817
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000909.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-202675255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a+++a+++++g
  Itr_sc000909.1_g00008.1 26 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDKAAREFRG 75
                             69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.69E-322684No hitNo description
SMARTSM003809.2E-392689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-322683IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-222684IPR016177DNA-binding domain
PROSITE profilePS5103223.7362683IPR001471AP2/ERF domain
PfamPF008471.1E-132675IPR001471AP2/ERF domain
PRINTSPR003675.4E-112738IPR001471AP2/ERF domain
PRINTSPR003675.4E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAPKEKGTAV AVAAAKVHEI RKEQVHFRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE  60
EAARAYDKAA REFRGSKAKT NFPVPEDLLP LNFAAQLHVK NEKNAGGSPS PSSTVESSSG  120
GGGGGRVSPA VMADSSPLDL SLGGRAPVMF PLQNHPQRVV HPMVPGAYPA GVYPVSQIVY  180
LNALARAVAV NPPLNRQTET LNFFATNANC GDHSDSDSSS VIDLNAGYVE PRKGGPINNF  240
DLNHPPPESL GTGAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-222684261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-222684564ATERF1
3gcc_A9e-222684564ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU7540231e-151KU754023.1 Ipomoea batatas ERF9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162926.11e-147PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A484LPU22e-62A0A484LPU2_9ASTE; Uncharacterized protein
STRINGSolyc10g009110.1.12e-60(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-28erf domain protein 9