PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000904.1_g00016.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 360aa MW: 40855.2 Da PI: 10.2479

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000904.1_g00016.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.6	3.1e-31	10	108	1	98
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 aCaaCk++r+kC d Cvl ++fpa+ +++f++v+++FG +n++k++k+l++ ++++a++sl++eA+ + +dPv+G +g++++lq+ Itr_sc000904.1_g00016.1 10 ACAACKHQRKKCRGDtCVLWRHFPATMKEDFQAVNRVFGIANISKIIKSLDPVQQDIAVKSLLWEAKSWKEDPVHGPLGLFNRLQR 95 7*********9777****************************************************************** PP DUF260 86 qleqlkaelallk 98 +l lk+++++l+ Itr_sc000904.1_g00016.1 96 ELLFLKEKINMLQ 108 ****9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.533	9	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-29	10	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MAGEEGNRPA CAACKHQRKK CRGDTCVLWR HFPATMKEDF QAVNRVFGIA NISKIIKSLD 60 PVQQDIAVKS LLWEAKSWKE DPVHGPLGLF NRLQRELLFL KEKINMLQPR PLIPAPPPPR 120 PETYQSLGGV DRGVGSFNFH PNYTGQYRMS NGHELQQIIQ PNFGRTGFNH QYTRNMVNPR 180 PVQQYLPPPY HNSFGHNKEN ALVPYANNAG ISGQDRRSVI HVGDRTSNVV RPSRLPAGPA 240 MSSNRSSVTV KQGDEDETGN DEARELVAAL YYDHQLLNST NQNNVQGRFR PSSRWENTRK 300 AMRYNPVDLT LGRWNKFQHS GMIGMWNQCI RVLSALESTE LGRYGKVRQV DPGPNRPDRP

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MAGEEGNRPA CAACKHQRKK CRGDTCVLWR HFPATMKEDF QAVNRVFGIA NISKIIKSLD  60
PVQQDIAVKS LLWEAKSWKE DPVHGPLGLF NRLQRELLFL KEKINMLQPR PLIPAPPPPR  120
PETYQSLGGV DRGVGSFNFH PNYTGQYRMS NGHELQQIIQ PNFGRTGFNH QYTRNMVNPR  180
PVQQYLPPPY HNSFGHNKEN ALVPYANNAG ISGQDRRSVI HVGDRTSNVV RPSRLPAGPA  240
MSSNRSSVTV KQGDEDETGN DEARELVAAL YYDHQLLNST NQNNVQGRFR PSSRWENTRK  300
AMRYNPVDLT LGRWNKFQHS GMIGMWNQCI RVLSALESTE LGRYGKVRQV DPGPNRPDRP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-15	11	105	12	105	LOB family transfactor Ramosa2.1
5ly0_B	1e-15	11	105	12	105	LOB family transfactor Ramosa2.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019168899.1	1e-165	PREDICTED: LOB domain-containing protein 30-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14094	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50510.1	4e-22	LOB domain-containing protein 28