PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000904.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

VOZ

Protein Properties

Length: 539aa MW: 59725.5 Da PI: 6.8498

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000904.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	419	8.1e-129	259	478	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewl...qdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecega 83 pppsaflgpkcalwdc+rpa gs+w+ qdycs +ha+la neg g p++rp gi+lkd+llf+alsak+qgk+vg+pecega Itr_sc000904.1_g00010.1 259 PPPSAFLGPKCALWDCPRPAMGSDWCqksQDYCSDYHASLAPNEGYIGQPPIVRPMGIGLKDNLLFQALSAKAQGKDVGVPECEGA 344 89*********************944459*************************************************** PP VOZ 84 atakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhl 169 at+kspwna+elfdl+++egetirewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm+efgglkrsyymdpqp++++ewhl Itr_sc000904.1_g00010.1 345 ATTKSPWNAPELFDLKVVEGETIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMNEFGGLKRSYYMDPQPMKNLEWHL 430 ********************************************************************************** PP VOZ 170 yeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 yeyein++d++alyrlelklvd+kks+kgkv++ s+adlqk++grl+a Itr_sc000904.1_g00010.1 431 YEYEINNYDTCALYRLELKLVDGKKSPKGKVNNPSVADLQKQMGRLNA 478 *******************************************986 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009408	Biological Process	response to heat
GO:0009414	Biological Process	response to water deprivation
GO:0009631	Biological Process	cold acclimation
GO:0009816	Biological Process	defense response to bacterium, incompatible interaction
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048578	Biological Process	positive regulation of long-day photoperiodism, flowering
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MLLPRTQSHL IDTKLLSSPL HNFLSLLLSN PLSSAFLRSS APPLLTRLRL KVKASSLRMG 60 KGSKSGVGKS ASYQLFKDRA KNRVDDLQGM FTDLQSLRKE SRTSEVAVLE EQLNQVLREW 120 KAELNQPSPA SSLQGGSLGF NTSDLCRLVQ LGEEEDDATS ALAAPKSEPD AQKVSAAAGY 180 QEGLNVAQVL QEQNLQLVDQ SKNAPLVVNN VGISNIGPAQ LGDYQSYDFH QDFEQQYFPG 240 FDCVNLCLED VLPAIHINPP PSAFLGPKCA LWDCPRPAMG SDWCQKSQDY CSDYHASLAP 300 NEGYIGQPPI VRPMGIGLKD NLLFQALSAK AQGKDVGVPE CEGAATTKSP WNAPELFDLK 360 VVEGETIREW LFFDKPRRAF ESGNRKQRSL PDYNGRGWHE SRKQVMNEFG GLKRSYYMDP 420 QPMKNLEWHL YEYEINNYDT CALYRLELKL VDGKKSPKGK VNNPSVADLQ KQMGRLNAEF 480 PPDTKRTVKG RAKANAKDNT GSIPSAPNPA VPNSEGLCYT TALPPYDYVI NDLSGYYIT

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MLLPRTQSHL IDTKLLSSPL HNFLSLLLSN PLSSAFLRSS APPLLTRLRL KVKASSLRMG  60
KGSKSGVGKS ASYQLFKDRA KNRVDDLQGM FTDLQSLRKE SRTSEVAVLE EQLNQVLREW  120
KAELNQPSPA SSLQGGSLGF NTSDLCRLVQ LGEEEDDATS ALAAPKSEPD AQKVSAAAGY  180
QEGLNVAQVL QEQNLQLVDQ SKNAPLVVNN VGISNIGPAQ LGDYQSYDFH QDFEQQYFPG  240
FDCVNLCLED VLPAIHINPP PSAFLGPKCA LWDCPRPAMG SDWCQKSQDY CSDYHASLAP  300
NEGYIGQPPI VRPMGIGLKD NLLFQALSAK AQGKDVGVPE CEGAATTKSP WNAPELFDLK  360
VVEGETIREW LFFDKPRRAF ESGNRKQRSL PDYNGRGWHE SRKQVMNEFG GLKRSYYMDP  420
QPMKNLEWHL YEYEINNYDT CALYRLELKL VDGKKSPKGK VNNPSVADLQ KQMGRLNAEF  480
PPDTKRTVKG RAKANAKDNT GSIPSAPNPA VPNSEGLCYT TALPPYDYVI NDLSGYYIT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019170214.1	0.0	PREDICTED: transcription factor VOZ1-like
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A484LZT2	0.0	A0A484LZT2_9ASTE; Uncharacterized protein
STRING	XP_009776508.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2818	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]