PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000880.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NAC
Protein Properties Length: 299aa    MW: 33485.6 Da    PI: 5.4868
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000880.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.61.8e-1771383128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWka 85 
                               G+ F+Ptd+el+ +yL+  v gk+  +++++i+  d+y   eP ++    +++    y+F++  +k + g r  r + ++g+Wk 
  Itr_sc000880.1_g00004.1   7 HGYIFKPTDKELM-QYLEGFVLGKPlKHTFDFIALEDLYGEkEPAEIF--GSGDPMTRYYFTELTRKCQGGLRFLRrVGDRGTWKG 89 
                              6999*********.9**********5445688**99*996449****6..23344578***************9886888****** PP

                      NAM  86 tgkdkevlskkgelvglkktLvfykgrapkge.......ktdWvmheyrl 128
                              +   +++ + +++++g +k+L + +++++k++         +W+m+ey+l
  Itr_sc000880.1_g00004.1  90 QDAGHPIRV-RDKVMGFRKSLKYETKKSKKSKgglgdcpGESWLMKEYSL 138
                              ********9.8999*********9665555444456555689******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.6415161IPR003441NAC domain
PfamPF023656.2E-117138IPR003441NAC domain
SuperFamilySSF1019415.36E-227160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MARRSLHGYI FKPTDKELMQ YLEGFVLGKP LKHTFDFIAL EDLYGEKEPA EIFGSGDPMT  60
RYYFTELTRK CQGGLRFLRR VGDRGTWKGQ DAGHPIRVRD KVMGFRKSLK YETKKSKKSK  120
GGLGDCPGES WLMKEYSLSN DYLRDKHVVL KDVVLCRIRR RVVRSTSRSS EPSTLNINEN  180
DTPLEIYNWP ENDDVTVSLP PTQTPTLAAA DVSSGVDDAY GGVIAMDNHT LQLDEFNELY  240
ELLRRLENDD VTVSLPPSET STLAAAEASS GVDDAYGGGS AMGNDIENYN FGPTSYPRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163553.11e-116PREDICTED: NAC domain-containing protein 78-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.28e-09NAC domain containing protein 50