PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000868.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 218aa MW: 25075 Da PI: 9.3538 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 91.7 | 1.3e-28 | 6 | 83 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrl 128 ++kewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+v+s++ge+ +glkk+Lv+y+g+a kg+ktdW+mhe+rl Itr_sc000868.1_g00001.1 6 GDKEWYFFCIRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSTGGEThhcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 83 789**************************************95554556***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 35.062 | 1 | 109 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.72E-33 | 4 | 108 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-12 | 9 | 83 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
IGTHVGDKEW YFFCIRGRKY RNSVRPNRVT GSGFWKATGI DKPVYSTGGE THHCIGLKKS 60 LVYYRGSAGK GTKTDWMMHE FRLPPKLSDK NNNICQEAEV WTLCRIFKRT TNYKRCMPDW 120 RQQTSRQSTI VENNASSKNE AIMGAAQQEQ RNQFYASNDQ ISMALSSYSS SSNTTTFWNS 180 PKLLDNNHFF IGENPHWDEL KSVVDLATDP QSFCYSHT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-30 | 6 | 115 | 69 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-30 | 6 | 115 | 69 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-30 | 6 | 115 | 69 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-30 | 6 | 115 | 69 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-30 | 6 | 115 | 72 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-30 | 6 | 115 | 72 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-30 | 6 | 115 | 72 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-30 | 6 | 115 | 72 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-30 | 6 | 115 | 72 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-30 | 6 | 115 | 72 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-30 | 6 | 115 | 72 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-30 | 6 | 115 | 72 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-30 | 6 | 115 | 69 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-30 | 6 | 115 | 69 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019193017.1 | 1e-135 | PREDICTED: transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 2e-60 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A1U8HGS6 | 8e-71 | A0A1U8HGS6_CAPAN; transcription factor JUNGBRUNNEN 1-like | ||||
STRING | XP_006484909.1 | 1e-70 | (Citrus sinensis) | ||||
STRING | XP_006437126.1 | 1e-70 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 4e-61 | NAC domain containing protein 42 |