PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000863.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 269aa MW: 30104.7 Da PI: 7.2512 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 120 | 169 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f taeeAa+a+++a+ +++g Itr_sc000863.1_g00006.1 120 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFKTAEEAARAYDRAAIEFRG 169 59*******.**********94....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.21E-34 | 119 | 176 | No hit | No description |
PROSITE profile | PS51032 | 24.908 | 120 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 120 | 177 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-14 | 120 | 169 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-38 | 120 | 183 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-32 | 120 | 177 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-12 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-12 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MQWSTQILPP EPFSTAANRP SPPPPLTGAH QEFSVMVSAL QNVMNGGDAA SDVNFDSRIP 60 TACEGFAELP ALEQRCQFCK YEGCLGCNFF AAPDNIARQT EEEKKKEKIN SVTTKRKKKN 120 YRGVRQRPWG KWAAEIRDPR KAARVWLGTF KTAEEAARAY DRAAIEFRGP RAKLNFSFAD 180 YTNTSTTTTM AVTTSSTRQQ HVTNPSSSST ISQQPRQEVA VVQENSENGT NWSAPAKMEV 240 GNGDEEFQEW MKMLMDFNDV SSDYILQLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-23 | 117 | 176 | 2 | 62 | ATERF1 |
3gcc_A | 2e-23 | 117 | 176 | 2 | 62 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 118 | KKKEKINSVTTKRKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019166004.1 | 1e-143 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 8e-38 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A1S4BA87 | 5e-58 | A0A1S4BA87_TOBAC; ethylene-responsive transcription factor ERF109-like | ||||
STRING | XP_009784619.1 | 1e-58 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-36 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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