PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000807.1_g00019.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 280aa MW: 31490.9 Da PI: 4.7177

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000807.1_g00019.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.7	5.3e-40	10	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqq 85 aCaaCk++rrkCa+dCvlapyfpa+qpk f+n+h+lFG sn++k+lk+l++e+ + dam+s+++eA++r r PvyG+v+ i l+q Itr_sc000807.1_g00019.1 10 ACAACKYQRRKCASDCVLAPYFPANQPKMFQNAHRLFGISNITKILKQLDDEDqKADAMKSIIFEADMRERFPVYGCVEYICYLRQ 95 7**********************************************666649*************************** PP DUF260 86 qleqlkaelallkee 100 ql+q+ el+++ ++ Itr_sc000807.1_g00019.1 96 QLQQTMDELHYVYTQ 110 *******998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.066	9	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.7E-39	10	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MTVKGGTSPA CAACKYQRRK CASDCVLAPY FPANQPKMFQ NAHRLFGISN ITKILKQLDD 60 EDQKADAMKS IIFEADMRER FPVYGCVEYI CYLRQQLQQT MDELHYVYTQ LAVCKEQQLL 120 GSVVNSHNNN SNNYDHQQHT TLLQPYGINN AAEMPYPMNV NLFGAAEDDM GEGESSESVG 180 KPNLLGVEPS SYYEHPTDVL VKNTNYNGHM SLPSFPNEHS QDYGLVAFNN TIADDRQSYI 240 ETKETCESSS ESSFKDTTQS NEELSRSELK NAAAYFSLTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-28	2	111	4	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-28	2	111	4	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019161462.1	1e-178	PREDICTED: LOB domain-containing protein 6-like
TrEMBL	A0A1S3X592	5e-92	A0A1S3X592_TOBAC; LOB domain-containing protein 2-like
STRING	XP_009768780.1	2e-92	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	3e-41	LOB domain-containing protein 27