PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000803.1_g00017.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WOX

Protein Properties

Length: 312aa MW: 34815.8 Da PI: 6.9039

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000803.1_g00017.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.3	3.7e-20	41	102	2	57
T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+t+eq+++L+el+++ r p+a++++++++kl +++ ++V++WFqN++a+e++ Itr_sc000803.1_g00017.1 41 STRWTPTTEQIRILKELYYNngVRSPTADQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 102 58**************98678***********************************97 PP
2	Wus_type_Homeobox	115.4	2.7e-37	40	104	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++tRWtPt+eQi+iL+ely+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ Itr_sc000803.1_g00017.1 40 SSTRWTPTTEQIRILKELYYnNGVRSPTADQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 104 789*************9779***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.6E-8	23	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.27E-12	27	104	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.56	37	103	IPR001356	Homeobox domain
SMART	SM00389	4.5E-6	39	107	IPR001356	Homeobox domain
CDD	cd00086	5.27E-8	42	104	No hit	No description
Pfam	PF00046	1.7E-17	42	102	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010492	Biological Process	maintenance of shoot apical meristem identity
GO:0080166	Biological Process	stomium development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MEPQQQQQYY HQTQAQQGGG NEEGGGSGSK NSNGYLCRQS STRWTPTTEQ IRILKELYYN 60 NGVRSPTADQ IQRISAKLRQ YGKIEGKNVF YWFQNHKARE RQKKRLTASA TAPPDAAAAF 120 SMQMQRPGVW RSADHCSTFN PPASSSPGMV AVGQIGNYGG YGSTVAMERS FRDCSISAGS 180 NGNGCVMAAS QNYGWVGVDH HHHHPYSSST PYYPFLDKIK STYDDHETLE EDQQDEDDQK 240 EPETLPLFPV HADHHHHGFY GGKPPPESSN GGGYYTNTDQ WFHYDHNGSA SRASLELTLN 300 SYNIATSSHH FP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00265	DAP	Transfer from AT2G17950	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU672818	0.0	EU672818.1 Ipomoea nil wuschel-like protein (WUS1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019172144.1	1e-166	PREDICTED: protein WUSCHEL
Swissprot	Q8LL11	6e-85	WUS_PETHY; Protein WUSCHEL
TrEMBL	B2ZJV4	1e-164	B2ZJV4_IPONI; Wuschel-like protein
STRING	XP_009792214.1	6e-88	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7604	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	3e-41	WOX family protein

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]