PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000790.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 355aa    MW: 39657.8 Da    PI: 7.8808
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000790.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.6e-10534130
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                             +++WT eE+e l  +v+++G g Wk I r 
  Itr_sc000790.1_g00005.1  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRD 34
                             79*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.214151IPR017930Myb domain
SuperFamilySSF466893.01E-10250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-10549IPR009057Homeodomain-like
PfamPF002491.4E-6532IPR001005SANT/Myb domain
CDDcd116601.64E-13650No hitNo description
SMARTSM005262.2E-13194259IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.01E-13194273IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.761196264IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.3E-11196266IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.9E-8199257IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LYSRSNIDLK IGSNSYTMDL  60
GQPARWTITI YILNVHNSHS IATMGVLKSS SIDIEPAPSL APKDWWKLCS GENLLSLIDV  120
LVPSDPSDKW RNLNVSANGQ NPRDKSRTPK VKANPDSSVT PVLNAQTPAS SIPASDDVAT  180
DAIVEDNSKC LLDGKTASKY NAMIYEALST LKDPDGSDTS TIVRFIEQRQ EVPQNFRRLL  240
SSRLRKLVQQ EKLEKIQNCF RIKRELLGSP KKKESWSRHD QNQNQKTCYL GNTVEEAAVS  300
AAYRIAEAEN KSFVAAEAVK EAERVSRMAE DSNMLLQLAK EIFEKCENGE IVLMA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150877.11e-153PREDICTED: telomere repeat-binding factor 4-like
RefseqXP_019150878.11e-153PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A068U3Q46e-90A0A068U3Q4_COFCA; Uncharacterized protein
STRINGXP_009757029.12e-86(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.12e-37MYB_related family protein