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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Itr_sc000759.1_g00002.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 278aa MW: 31654.9 Da PI: 4.9012 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 26.5 | 1.5e-08 | 3 | 27 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
+W+ Ia+ ++ gRt++++k++w+++l
Itr_sc000759.1_g00002.1 3 RWSMIAAQLP-GRTDNEIKNYWNSHL 27
5*********.************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 15.425 | 1 | 31 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 3.0E-12 | 3 | 27 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 4.24E-7 | 3 | 31 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 6.0E-6 | 3 | 27 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 4.03E-6 | 3 | 27 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 278 aa Download sequence Send to blast |
MCRWSMIAAQ LPGRTDNEIK NYWNSHLSRK FYSFRRAGSE KTIENLKTDL VKAAEQTKRR 60 RGKVSRSAMK KNKTTGYKHF SSNINHPPEL PHFQTLCTEP VNNNAATSTV QIPSTPPILM 120 EKEDDIDTSS FLCMAGSEYF SLDDIMPILV EEMDPGTILS TSLGNNVKEF GVVAQSQHDD 180 LAKNSNSSVH IYSEFIPSDH HHQFGGENSE STATSSSFPV EHHCSLTQNI IDWDNWQYYW 240 DDDSGNNLCN TQNLMPQQND EDDVMLSSPW PWDDTFYT |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019188365.1 | 1e-127 | PREDICTED: transcription repressor MYB6-like | ||||
| Refseq | XP_019188366.1 | 1e-127 | PREDICTED: transcription repressor MYB6-like | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA19665 | 2 | 3 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G47460.1 | 4e-17 | myb domain protein 12 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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