PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000731.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 289aa    MW: 33116.5 Da    PI: 4.2281
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000731.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.8e-121952741293
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                               +g l++p + +++h++    + tl+l+d++gr+W+ +++ ++ +++ + ++GW++ ++ n ++  D ++ ++++ s+  ++
  Itr_sc000731.1_g00014.1 195 DRGGLYIPMDVIKDHNIA--LPPTLILRDPRGREWKSEVKNWRDGRTWLTSGGWQSLCRVNLVDKDDKCICEFVRPSTNDML 274
                              35679**********655..6779***************99**99999999*******************998876555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.389150IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-61554IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-51754IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-19180282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-18180279IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.547184283IPR003340B3 DNA binding domain
CDDcd100171.27E-9185281No hitNo description
SMARTSM010195.2E-13187283IPR003340B3 DNA binding domain
PfamPF023621.8E-10195273IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEMTETGDGL CFQNNYWAKF VEDNSITNGD CLVFSYDGYD LFDFVLFDQF GCEKIVVRDA  60
QPQVKKKVKQ EEEEEDDVVN DDDDNNNCGD EDDCNFVNEE VKNEVDDSGG SGDEDDSDFV  120
IEEDKNEVEE DDDEAKSKQK RNNSCGSKKC TGARDGSSSK KKNNVFDQFG MELFSSGQYI  180
QPKNPYFVTK LRPKDRGGLY IPMDVIKDHN IALPPTLILR DPRGREWKSE VKNWRDGRTW  240
LTSGGWQSLC RVNLVDKDDK CICEFVRPST NDMLLQVTIV REQTTKTMK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16169PQVKKKVKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156075.11e-120PREDICTED: B3 domain-containing protein At5g60140-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60140.13e-09B3 family protein