PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G60140.1
Common NameMGO3.2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 328aa    MW: 37083.8 Da    PI: 4.1641
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G60140.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.4e-1615108199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  ffk  +ps ++  + lvlp +f  ++ ++k  +kt+t+++ sg+ W++ +  +k++g+   +v+ +GWk+ v++ +L+ gD + F++dg++ f  +++
  AT5G60140.1  15 FFKPYLPSESG--DDLVLPISFN-SC-LPKSLPKTVTVRSISGNIWKLGF--KKCGGEverFVMVSGWKKIVRDENLNGGDLLSFEFDGSHFF--NFS 104
                  67777555555..569******7.67.5677999****************..666666667*************************9996666..999 PP

                  EE-S CS
           B3  96 vfrk 99 
                  +f++
  AT5G60140.1 105 IFDH 108
                  9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-1713108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.61913109IPR003340B3 DNA binding domain
SuperFamilySSF1019361.59E-1814108IPR015300DNA-binding pseudobarrel domain
CDDcd100172.87E-1515107No hitNo description
PfamPF023623.2E-1315108IPR003340B3 DNA binding domain
SMARTSM010193.2E-1815109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-10229322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-13229322IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0065234325IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000084anatomyplant sperm cell
PO:0009009anatomyplant embryo
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009052anatomyflower pedicel
PO:0025022anatomycollective leaf structure
PO:0001185developmental stageplant embryo globular stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MNTRGNYSNG FTSKFFKPYL PSESGDDLVL PISFNSCLPK SLPKTVTVRS ISGNIWKLGF  60
KKCGGEVERF VMVSGWKKIV RDENLNGGDL LSFEFDGSHF FNFSIFDHET TCKRLKRSSE  120
QSKDIIKVGS DCEEESQASD DVIVLNSDDS DDSDNDYSVE DDNVAEDDDG LEDEVDVEAE  180
DGYDAKDSDG LEDEDDDEAE DGYDAKDDDG LEDEDDLEDE DDERRYLDDH ENPYFTMTLN  240
PKKKSQLHIP AHVIRDYDLT FPERITVVDE MGALEKAIKI QKNGCIFVKG FGSFIRRNKM  300
KMTDKMICEL KRTGGNLVHT IKVKIISG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.291820.0flower| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453594720.0
Genevisible247666_at0.0
Expression AtlasAT5G60140-
AtGenExpressAT5G60140-
ATTED-IIAT5G60140-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G60140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G60140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4938020.0AB493802.1 Arabidopsis thaliana At5g60140 mRNA for hypothetical protein, partial cds, clone: RAAt5g60140.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200822.10.0AP2/B3-like transcriptional factor family protein
SwissprotQ9FHB00.0Y5014_ARATH; B3 domain-containing protein At5g60140
TrEMBLA0A178UPW80.0A0A178UPW8_ARATH; Uncharacterized protein
STRINGAT5G60140.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Representative plantOGRP8585614
Publications ? help Back to Top
  1. Yonekura-Sakakibara K, et al.
    Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis.
    Plant Cell, 2008. 20(8): p. 2160-76
    [PMID:18757557]
  2. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  3. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]