PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000723.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 279aa    MW: 31275 Da    PI: 6.6382
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000723.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.22.9e-437105199
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk++rrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l++++reda++sl+yeAe+r+rdPvyG+vg+i+ lqq+
  Itr_sc000723.1_g00002.1   7 PCAACKLQRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELHNSQREDAVNSLAYEAECRLRDPVYGCVGLISILQQK 92 
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallke 99 
                              l+q++++l + k+
  Itr_sc000723.1_g00002.1  93 LKQVQHDLLSSKR 105
                              ******9987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.6536107IPR004883Lateral organ boundaries, LOB
PfamPF031959.6E-437101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSSSSTPCAA CKLQRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELHNSQR  60
EDAVNSLAYE AECRLRDPVY GCVGLISILQ QKLKQVQHDL LSSKRELANY IGPAAMQPLV  120
QHPGFLQHPN NPSNYLMGLP TVVPHAAAQL IAHDSLQQQQ QQPFIEPYHQ LAGVVRTYDQ  180
QQQQQQQQHE LMTFNSGFES GGPVNGAGMF HQMSSAASMP PYDTPYAMQQ PGQEHFDPNH  240
DQIQLQSQPP MQQQQQQQQP PQPQERPKSE EGRSVDPSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4631107114LOB family transfactor Ramosa2.1
5ly0_B1e-4631107114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182608.11e-164PREDICTED: LOB domain-containing protein 36-like
SwissprotQ9FKZ35e-69LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A2R6R5R33e-96A0A2R6R5R3_ACTCH; LOB domain-containing protein
STRINGSolyc02g065150.1.12e-89(Solanum lycopersicum)
STRINGXP_009774046.12e-89(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.16e-69ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]