PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000716.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | B3 | ||||||||
Protein Properties | Length: 359aa MW: 40614.5 Da PI: 8.6936 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.3 | 4.4e-16 | 61 | 135 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p kf+++ +k ++l+ +sg W++ l + ++++ ++++GWkeFv+++ L+e+D+++Fk++g s+f v +f+ Itr_sc000716.1_g00004.1 61 VPQKFVNNLREK--LAGCVSLKGPSGAIWNIGL--TACGEKLYFQRGWKEFVEEHSLQENDVLIFKYNGGSQF--DVLMFD 135 689999555444..3446***************..********************************998999..777776 PP | |||||||
2 | B3 | 40.9 | 3.6e-13 | 239 | 335 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+ ++tp +v + l++p + a+++ +e++++ltl+ + + W+ ++ y+k++ ++v ++ ++Fv +n+L+e D++vF+l + Itr_sc000716.1_g00004.1 239 FVAIMTPGNVYRGFFLTIPADWARKYLPTTEKNFDLTLRV-KENAWTTRC-YQKQGHAVVTGTAYRNFVLENNLEEFDVCVFRLAS 322 778999999*****************77778999999887.889******.8999999**************************98 PP S.SEE..EEEEE- CS B3 87 r.sefelvvkvfr 98 r ++ + v++fr Itr_sc000716.1_g00004.1 323 RsDDIVFDVSIFR 335 8677777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 32 | No hit | No description |
SMART | SM01019 | 5.4E-5 | 25 | 137 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-18 | 60 | 137 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.04E-18 | 60 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.676 | 61 | 137 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-13 | 61 | 135 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.40E-15 | 61 | 135 | No hit | No description |
SuperFamily | SSF101936 | 2.35E-14 | 238 | 335 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.8E-9 | 239 | 337 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.3E-12 | 239 | 335 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.72E-15 | 239 | 335 | No hit | No description |
PROSITE profile | PS50863 | 9.629 | 239 | 337 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-16 | 239 | 335 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MGDDCRGCQK WEEHIYWSRF QAVQFFQILS GCYNEKLCMF LVCCMCCVYY GIAPLPVVGA 60 VPQKFVNNLR EKLAGCVSLK GPSGAIWNIG LTACGEKLYF QRGWKEFVEE HSLQENDVLI 120 FKYNGGSQFD VLMFDQQSYC EKEASYFIRK CGHRELINGG KANGNPTPET NSESSVEVIR 180 ATKRKKLTKG GALAQTSVKQ GKSSSASRFQ LKSNRRPVTE EEKGNAIQMA SAVASCYGFV 240 AIMTPGNVYR GFFLTIPADW ARKYLPTTEK NFDLTLRVKE NAWTTRCYQK QGHAVVTGTA 300 YRNFVLENNL EEFDVCVFRL ASRSDDIVFD VSIFRVVEEV VPPSRVTQAV SSRCYNRRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-14 | 213 | 340 | 22 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-14 | 213 | 340 | 22 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00468 | DAP | Transfer from AT4G33280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019152838.1 | 0.0 | PREDICTED: B3 domain-containing protein REM16-like | ||||
TrEMBL | A0A068UH60 | 1e-103 | A0A068UH60_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13043 | 8 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 5e-55 | B3 family protein |