PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000711.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 419aa MW: 43987.5 Da PI: 8.1039

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000711.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.2	8.4e-40	95	201	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++ +ss+ + s+ Itr_sc000711.1_g00010.1 95 VAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVPLRSSGTTISA 180 689*****************************************************************988644444444442222 PP TCP 88 g...................k 89 + + Itr_sc000711.1_g00010.1 181 PatksgplfihggatamlgfH 201 222233344444444444431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.6E-37	100	208	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.705	100	154	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MDFMEPHSNK SSGSGNGNGA ASTNNTSDHH NHHHRPTPPA NQEPPPSSLQ LVPHISQPDP 60 AGPGSGKAPA TQPRDPFMGS ISTQNATNNT NSKVVAKKPS KDRHTKVDGR GRRIRMPALC 120 AARVFQLTRE LGHKSDGETI EWLLQQAEPA IIAATGTGTI PANFSTLNVP LRSSGTTISA 180 PATKSGPLFI HGGATAMLGF HHQFSTAGYG HDPDENFMKK RLREDTSGAT SPSAAKPDRT 240 GVQGHEPGAD SIPGSSQPSS FIPAPAMWAV APAAGNVGNT FWMLPVSGGG GATTATVGVA 300 AAAAQQEQHQ FLHYKGSAAG MQRIGGFEFP GSARFSPVQL GSMVLQQPQP VQQLGLGVSE 360 TNMGMLASIN AYSGGGSRVD LGMNLEQQQQ HHHHQQHHQH HQNQPQTSDS GDENPTASQ

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MDFMEPHSNK SSGSGNGNGA ASTNNTSDHH NHHHRPTPPA NQEPPPSSLQ LVPHISQPDP  60
AGPGSGKAPA TQPRDPFMGS ISTQNATNNT NSKVVAKKPS KDRHTKVDGR GRRIRMPALC  120
AARVFQLTRE LGHKSDGETI EWLLQQAEPA IIAATGTGTI PANFSTLNVP LRSSGTTISA  180
PATKSGPLFI HGGATAMLGF HHQFSTAGYG HDPDENFMKK RLREDTSGAT SPSAAKPDRT  240
GVQGHEPGAD SIPGSSQPSS FIPAPAMWAV APAAGNVGNT FWMLPVSGGG GATTATVGVA  300
AAAAQQEQHQ FLHYKGSAAG MQRIGGFEFP GSARFSPVQL GSMVLQQPQP VQQLGLGVSE  360
TNMGMLASIN AYSGGGSRVD LGMNLEQQQQ HHHHQQHHQH HQNQPQTSDS GDENPTASQ

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019199658.1	0.0	PREDICTED: transcription factor TCP23-like
Swissprot	Q9C518	2e-71	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A1S4D6B7	1e-174	A0A1S4D6B7_TOBAC; transcription factor TCP23-like
STRING	XP_009624724.1	1e-173	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-55	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]