PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000707.1_g00018.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ZF-HD

Protein Properties

Length: 255aa MW: 28596.8 Da PI: 7.3105

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000707.1_g00018.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.2	7.1e-32	52	107	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k rY+eC+kNhA+ +GghavDGCgEfmp+ ge g+ +alkCaAC+CHRnFHR+e ++ Itr_sc000707.1_g00018.1 52 KPRYRECQKNHAVGIGGHAVDGCGEFMPA-GEFGSLDALKCAACNCHRNFHRKEINT 107 679***********************9.888******************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.9E-28	54	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.9E-30	54	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-21	54	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.084	55	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.1E-28	164	235	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.64E-16	165	234	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	1.0E-25	173	229	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MEFEDQQHSG GNGTGPGYDS LSNSNSAHPR MPENDDGAGD LPVTEPPLQV RKPRYRECQK 60 NHAVGIGGHA VDGCGEFMPA GEFGSLDALK CAACNCHRNF HRKEINTAAL VPVGYHHHHR 120 APTGYLHHYH HHAPPLQRPL ALPSISGSAY REELEELDLE MDTATPNSGG ASKKRFRTKF 180 TEVQKAKMME LAERLGWRIQ KESEEAVEQF CSEYGVRRHV FKVWMHNNKH TVAKKTLEPN 240 NNNNSNQPNQ DPPRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-23	172	231	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019185230.1	1e-155	PREDICTED: zinc-finger homeodomain protein 1-like isoform X1
Swissprot	Q6YXH5	1e-70	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A1S3ZEH4	6e-82	A0A1S3ZEH4_TOBAC; zinc-finger homeodomain protein 2-like isoform X2
TrEMBL	A0A1U7YG84	6e-82	A0A1U7YG84_NICSY; zinc-finger homeodomain protein 2-like isoform X2
STRING	XP_009802157.1	2e-81	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	4e-64	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]