PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000707.1_g00011.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 27824.8 Da PI: 7.5065

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000707.1_g00011.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.4	3.3e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRr g++KKAeELSvLCda+va+i+fss+gkl+ ys+ Itr_sc000707.1_g00011.1 10 KIDNVTARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSSGKLFHYSN 59 69**********************************************85 PP
2	K-box	44.2	8e-16	93	171	20	98
K-box 20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++++L kei + + ++++ Ge+L++Ls++eLqqLe+ Le +l ++ +kK e ++++i++lq+k l een++Lr++ Itr_sc000707.1_g00011.1 93 NHSRLSKEIAEKTQRLKQMRGEELQELSIEELQQLERSLEIGLGHVIKKKGEKIMKEINQLQEKGVHLMEENERLRQQA 171 6788989988888888************************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.324	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.8E-37	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.55E-36	2	77	No hit	No description
SuperFamily	SSF55455	2.62E-29	3	74	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-26	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	12.53	87	177	IPR002487	Transcription factor, K-box
Pfam	PF01486	4.4E-14	92	170	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MARDKIQMRK IDNVTARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS SGKLFHYSNS 60 SMREILEKRN LHSKNLEKMG LPSLELQLVE NSNHSRLSKE IAEKTQRLKQ MRGEELQELS 120 IEELQQLERS LEIGLGHVIK KKGEKIMKEI NQLQEKGVHL MEENERLRQQ ALETSKGQRS 180 MAVAGDSENQ LNEEGGLSSE SVTNACKYPD YEDCSDTSLK LGPFIIAGCP TQAEWRILTT 240 GLSLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-18	1	73	1	73	MEF2 CHIMERA
6byy_B	2e-18	1	73	1	73	MEF2 CHIMERA
6byy_C	2e-18	1	73	1	73	MEF2 CHIMERA
6byy_D	2e-18	1	73	1	73	MEF2 CHIMERA
6bz1_A	2e-18	1	73	1	73	MEF2 CHIMERA
6bz1_B	2e-18	1	73	1	73	MEF2 CHIMERA
6bz1_C	2e-18	1	73	1	73	MEF2 CHIMERA
6bz1_D	2e-18	1	73	1	73	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	D84512	0.0	D84512.1 Ipomoea nil mRNA for DNA-binding protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019185164.1	1e-142	PREDICTED: MADS-box protein JOINTLESS-like
Swissprot	Q9FUY6	1e-104	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	A3DSE7	1e-139	A3DSE7_IPONI; DNA-binding protein
STRING	XP_009783886.1	1e-107	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA938	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	6e-76	MIKC_MADS family protein

Publications ? help Back to Top
Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985]