PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000690.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GeBP
Protein Properties Length: 225aa    MW: 25142.6 Da    PI: 7.7477
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000690.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573362e-1132110298
                   DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 
                              l+++++s+eDei lL++l++ +++               v+  +  +vs++q+  Ki+r+K++++k  k      + +++++hd++
  Itr_sc000690.1_g00002.1  32 LSNKVFSKEDEINLLKALLESTTDPT-------------VSLPLGRHVSETQIAAKIKRMKERYHKLAKS-----KSRIKTAHDEE 99 
                              5789***************9855544.............66788999*******************9999.....7799******* PP

                   DUF573  88 ifelskkiWgs 98 
                              ++++++ iWg+
  Itr_sc000690.1_g00002.1 100 VYQIARLIWGK 110
                              *********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-934109IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSTSKRRSAS KRKTSAGATS DPKSPAAANS QLSNKVFSKE DEINLLKALL ESTTDPTVSL  60
PLGRHVSETQ IAAKIKRMKE RYHKLAKSKS RIKTAHDEEV YQIARLIWGK QAKKPAPLMV  120
KISETTAEET SPEIEKLPDG EDLGENAEKE NGDATGEVDL GDFPYLVEQM AVNFTGNDMY  180
LMGLRQLGSR KLEGMNEQWK GLMEEEAEFI AKKAQFYQEL MAFKN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2637480.0AB263748.2 Ipomoea trifida DNA, self-incompatibility (S-) locus region, haplotype:S1.
GenBankAH0137500.0AH013750.2 Ipomoea trifida haplotype S1 putative disease resistance protein gene, partial cds; hypothetical protein, putative zinc finger protein, putative tnp2 transposase, putative transposase En/Spm, putative 50S ribosomal protein L9, hypothetical protein, putative CDK regulatory subunit, putative copia-like polyprotein, putative PHD zinc finger protein, putative glycosyltransferase, hypothetical protein, putative RelA/SpoT protein, hypothetical protein, putative defensin protein, hypothetical protein, putative phosphatidylcholine-sterol acyltransferase, putative dihydroflavonol reductase, putative non-phototropic hypocotyl 3-like protein, putative adapitin protein, putative DNA repair protein, putative serine/arginine (SR) protein kinase protein, putative vacuolar assembling protein, hypothetical protein, putative serine carboxipeptidase, hypothetical protein, putative endonuclease III protein, hypothetical protein, prephenate dehydratase, putative pentatricopeptide repeat-containing protein, putative tRNA isopentenylpyrophosphatase, hypothetical protein, putative histone deacetylase, and putative neutral invertase genes, complete cds; and putative protein kinase gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199092.11e-126PREDICTED: serine/arginine repetitive matrix protein 1-like
TrEMBLQ6JJ581e-157Q6JJ58_IPOTF; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1363478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G11510.11e-08DNA-binding storekeeper protein-related transcriptional regulator