PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000679.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 666aa MW: 77477.1 Da PI: 6.6376

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000679.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.5	1.1e-23	56	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fYn YAke GF +r+s+s +++ +e +++++ Cs+ g+++++ + ++r+etrtgC a++++k+ ++++w++ ++el+Hn Itr_sc000679.1_g00010.1 56 DFYNVYAKEQGFGIRVSNSWFRSKRKERYRAKLSCSNAGFKKKSGAN-----HPRPETRTGCPAMIVIKLVDSKRWRIVEVELQHN 136 6*******************999**************9988.....9******************************* PP FAR1 87 Hela 90 H+++ Itr_sc000679.1_g00010.1 137 HPVN 140 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-21	56	141	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-27	261	354	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.483	548	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-6	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MEAVSLNSEP VFEDGDEYED EGECTLVEHE NEIHETQKPP LPTVGLEFVS FDEAYDFYNV 60 YAKEQGFGIR VSNSWFRSKR KERYRAKLSC SNAGFKKKSG ANHPRPETRT GCPAMIVIKL 120 VDSKRWRIVE VELQHNHPVN PEIKRFYKSH KKMILAAKQI SQSEPVTEVH TIKLYRTDVV 180 DSPGDSYPEV NERDAGNPVN LSKHLELKDG DSHAVYNYFC RMKLTNPNFF YLMDLDDEGH 240 LRNVFWADAR SRAAYNYFSD IIAIDTTSLT NKYEIPLISF MGVNHHGQSV LLGCGFLGHE 300 SVEHFVWMFK SWLTSMLGRH PQVIVTDQSK PLQTAVSEVF PQARHCYCLS YIMRRVPEKL 360 GGLKGYELIK RQLNKAIYSS LKIVEFESFW REMIVQHGLN DNKWLQLLYE DRHKWVPVYL 420 KDVFSVGMIP IKENESLGAF FDGYVHKHTT FKEFVDRYDL ALQRKHLQEA MADHESQNSV 480 FELKTKCNFE LQLSKVYTKD VFKNFQTEVE GMFSCFHTRQ VSVNGPIMTF VVKERVEVEG 540 GMKEVRQYEV LYETTRMEVR CICSLFNFKG YLCRHALNVL NYNGVEEIPS QYILPRWHRD 600 FKRKFPGDFG LSDIDLDDPA KLYTSLYGRA LQVVEEGAQS QEHYQAVLQE LETLLNKFSI 660 VQDNLV

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MEAVSLNSEP VFEDGDEYED EGECTLVEHE NEIHETQKPP LPTVGLEFVS FDEAYDFYNV  60
YAKEQGFGIR VSNSWFRSKR KERYRAKLSC SNAGFKKKSG ANHPRPETRT GCPAMIVIKL  120
VDSKRWRIVE VELQHNHPVN PEIKRFYKSH KKMILAAKQI SQSEPVTEVH TIKLYRTDVV  180
DSPGDSYPEV NERDAGNPVN LSKHLELKDG DSHAVYNYFC RMKLTNPNFF YLMDLDDEGH  240
LRNVFWADAR SRAAYNYFSD IIAIDTTSLT NKYEIPLISF MGVNHHGQSV LLGCGFLGHE  300
SVEHFVWMFK SWLTSMLGRH PQVIVTDQSK PLQTAVSEVF PQARHCYCLS YIMRRVPEKL  360
GGLKGYELIK RQLNKAIYSS LKIVEFESFW REMIVQHGLN DNKWLQLLYE DRHKWVPVYL  420
KDVFSVGMIP IKENESLGAF FDGYVHKHTT FKEFVDRYDL ALQRKHLQEA MADHESQNSV  480
FELKTKCNFE LQLSKVYTKD VFKNFQTEVE GMFSCFHTRQ VSVNGPIMTF VVKERVEVEG  540
GMKEVRQYEV LYETTRMEVR CICSLFNFKG YLCRHALNVL NYNGVEEIPS QYILPRWHRD  600
FKRKFPGDFG LSDIDLDDPA KLYTSLYGRA LQVVEEGAQS QEHYQAVLQE LETLLNKFSI  660
VQDNLV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019177027.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_019177028.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_019177029.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Refseq	XP_019177030.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A2R6QMP1	0.0	A0A2R6QMP1_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	XP_009801241.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]