PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000661.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 25866.6 Da PI: 7.8788 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.7 | 3.6e-42 | 48 | 147 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++pe++r+da++slvyeA++r+rdPvyG++g i++lqqq Itr_sc000661.1_g00006.1 48 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMEVPESQRSDAANSLVYEANVRLRDPVYGCMGAISALQQQ 133 7************************************************************************************* PP DUF260 87 leqlkaelallkee 100 ++ l+ael+++++e Itr_sc000661.1_g00006.1 134 IQFLQAELNAVRAE 147 **********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.341 | 47 | 148 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.5E-42 | 48 | 145 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MERVDEIIGR KLKTEMEAAS AAASLSSPEM VMAGRRQVLG TTLNTITPCA ACKLLRRRCA 60 EECPFSPYFS PHEPHKFAAV HKVFGASNVS KMLMEVPESQ RSDAANSLVY EANVRLRDPV 120 YGCMGAISAL QQQIQFLQAE LNAVRAELLR HKYREAAAAA AAANSIITSA PALAAGAVSV 180 VELPQAPPTP TPPPPPPPPS VLVVSSSSSS SSTSPPSSAP SSLYTPASTV ASFGTIQTIN 240 MPFFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-45 | 41 | 151 | 4 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-45 | 41 | 151 | 4 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019162860.1 | 1e-110 | PREDICTED: LOB domain-containing protein 15-like | ||||
Swissprot | Q9AT61 | 5e-76 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A4D8YJA1 | 7e-93 | A0A4D8YJA1_SALSN; Uncharacterized protein | ||||
STRING | Migut.N00746.1.p | 1e-89 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 4e-75 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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