PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000632.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | WOX | ||||||||
Protein Properties | Length: 353aa MW: 40109.8 Da PI: 8.4716 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 69.5 | 4.2e-22 | 79 | 138 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psa+++++++++l +++ ++V++WFqN++a+e++ Itr_sc000632.1_g00002.1 79 SRWNPTPEQLQTLEELYRRgTRTPSADQIQHITAQLrkygKIEGKNVFYWFQNHKARERQ 138 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 116.6 | 1.1e-37 | 78 | 140 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ Itr_sc000632.1_g00002.1 78 SSRWNPTPEQLQTLEELYRRGTRTPSADQIQHITAQLRKYGKIEGKNVFYWFQNHKARERQKR 140 79***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.4E-5 | 76 | 143 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.28E-12 | 79 | 144 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.7E-9 | 79 | 138 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.8E-20 | 79 | 138 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.61E-6 | 80 | 140 | No hit | No description |
PROSITE profile | PS50071 | 11.062 | 84 | 139 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0099402 | Biological Process | plant organ development | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MWMMGYSDSG DFSMPDSFNS RRLRPLMPRP LTSSAASPNP SCALARIHGN DFVAFNHHLA 60 MAAEQSKREF NTHQVVVSSR WNPTPEQLQT LEELYRRGTR TPSADQIQHI TAQLRKYGKI 120 EGKNVFYWFQ NHKARERQKR RRQLESAAAG GAATDNDHPN VNNTNCMENT ERKELGASRT 180 GFEADQQLTK NWPSPSTLIA EKSGSIQRGT KAGMMAECRA EGWVQFEDGA EILQQRRSLH 240 EKNATWLQMM QLSSPSPPPP PTAAVATTMD YYTKQLLKLQ PHNNQDHRQH LNLLLDLPNY 300 KDHVDSDSQT LQLFPLRSGG SENENDKDTA APAMNTTFVN PHYQFFEFLP LKN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019153659.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 1 isoform X3 | ||||
TrEMBL | A0A1Q3CUD0 | 1e-116 | A0A1Q3CUD0_CEPFO; Homeobox domain-containing protein | ||||
STRING | XP_009804164.1 | 1e-113 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4681 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 6e-50 | WUSCHEL related homeobox 1 |